Zingiber officinale (ginger): 122035841
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Entry
122035841 CDS
T08725
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122035841
09124 Replication and repair
03420 Nucleotide excision repair
122035841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122035841
03400 DNA repair and recombination proteins [BR:
zof03400
]
122035841
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122035841
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122035841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
I_LWEQ
Motif
Other DBs
NCBI-GeneID:
122035841
NCBI-ProteinID:
XP_042450907
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MAVITMLAKYKTTVKEPGIPGVLKMMEDVFSFTPNDPRSAKKLKVDFRNIKGHKFSKDGS
KQALLNLTQVPEKGGGYIFEFNNFADRNVCRDFVGKVLGKFQTLTSEQTDQPSSGKVTAS
EKATASIEQLSTKEMEHRMKLLREDSELQKLHKELVFGNVLTESEFWATRKALLDDDSDR
TLKQRTGFKSAMLADIRPSTDGQTNKVTFSLTPEIIHQIFSEKPAVHRAFLNFVPVKMTE
KDFWTKYCRAEYLHRTKNSVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTVDMV
ADFSDDYIHLSVHGILQDGNKETIDSENDFAKRTLAHDVNRHATVVLEGRALDIELRDTR
AVAEALARSKEASSVDTSDENANLGRQERAVRMTELEDLQASHSLPYASLCIKDPREYFD
FQQVNALKALGGTGSRTIDYSLNTEDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGL
TQQISSTRYNLGKNPQESVLDRFPKRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKV
LRLKSAMADIYQKLKAIKDVQSDFRHQISLLIQPMLQSLDAAFAHYDAEEHKHSTKNGAR
LNGFVQ
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgatcactatgctcgccaagtataagacgactgtcaaggagcccgggattccc
ggggtgctcaagatgatggaagatgtattttcttttactccaaatgatccgaggtcagca
aagaagcttaaagtagattttagaaacattaaaggtcataaattcagtaaagatggttca
aagcaggcattgttgaaccttacgcaagttccagaaaagggtggaggctacatttttgag
ttcaataattttgcggatcgcaatgtttgtcgagattttgtagggaaagttttagggaag
tttcagactttgacatccgaacaaactgaccagccatcatctgggaaagttactgcatct
gagaaagctactgcatcaatcgaacaacttagcactaaagagatggagcacagaatgaag
ttgttgcgagaagatagtgaattgcaaaaattgcacaaagaacttgtctttggcaatgtg
ctgacagaatctgagttttgggccacgaggaaggctctacttgatgatgattccgataga
acattaaagcagcggacaggcttcaaaagtgcaatgcttgcagatataagaccatcaact
gatggccagaccaataaagttacatttagcctgacgccggagataattcatcagattttt
tctgaaaaacctgctgttcatcgggcatttttgaattttgttccagtcaagatgacagaa
aaggatttttggacaaaatattgtagagctgagtatctgcacaggacaaaaaattctgtg
gctgcagcagcagaggcagctgaagatgaagaacttgctgtttttttgaagcatgatgac
atactggcaaatgaagcccggcgaaagatcagacgggttgatccaaccgtagacatggta
gctgatttcagtgatgactacattcatctttctgttcatggaattcttcaagatggcaac
aaggagactattgacagcgagaatgattttgctaagaggactcttgcacatgatgttaac
cgtcatgcaacggttgttcttgaagggagggcattagatattgagttaagagacacacgg
gctgtagctgaagcacttgcaaggtctaaagaggcctcatctgttgacacatccgatgag
aatgctaatctagggagacaggaaagggcagttcgaatgactgagcttgaagatcttcag
gcttcccatagccttccatatgcatcactttgcatcaaggatccacgggagtattttgat
tttcaacaagtaaatgcactaaaggctttaggcggcactggttctagaacaatagattac
agcctaaatactgaggatgcatattattatctactgcaacagatctctgaggtgaagttg
caaggtgtacataatccagttgttcaatctgacactgctcttaaggttcttactgggctt
acacagcagatttcgagtaccagatataatcttggaaagaatccacaggagagcgtcctt
gatagatttcctaaaaggaccaaggatgaaattatgcttcattggatgtcaattcaggag
ttacttcgacacttttggtcatcttatccaatcacaactgcctacctatataataaagtt
cttaggctaaagagtgctatggctgatatctatcagaagctcaaggccataaaggacgtg
cagtcagatttccggcatcaaatctctcttcttattcagcccatgcttcagtctctggat
gccgcgtttgctcattacgacgcagaagaacataagcattcaacaaaaaatggagccaga
ctgaatggctttgttcagtga
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