Zingiber officinale (ginger): 122035895
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Entry
122035895 CDS
T08725
Name
(RefSeq) DNA topoisomerase 1 beta-like isoform X1
KO
K03163
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122035895
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
122035895
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Topoisomerases
122035895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Topoisom_I_N
Topo_C_assoc
DUF896
Fn3_PTPRU
Phage_GPO
Motif
Other DBs
NCBI-GeneID:
122035895
NCBI-ProteinID:
XP_042450983
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MSVHGCINAVMNDSEEDDDAPLVFRRANSSSKQRHLSSTSKKTDTQKDAGSNLVSNQIAQ
NGESSHLQNVKLLSKASSEKPPLARPNVGSLQPASHNKLITNDANLKPKDGLSDSDDDKP
LSHTLNSTSVAVQRKRSMEVEKICMHSKGDNFTSGSAGNMDLSKSNIKSENSDDDKPLSL
KYSSSGIVNRSASLQAVKASQSTKPLPLSVKLTSKTKEESDDSEDEKPLLSRFQSKAIGG
SSMKDSNVAEKSSSKSKLNGSDKKDKSSDENSAKGGQKRPLSGANPADSSSIKKSKLSDS
SASVKVKQEDFVKKESKTHDNDHLPIAQRMKKTVSSNSASISKNALHKTTSSSLKKSNVK
MKKKMKDSKFSKSLKMPPGSGGGQKWTTLEHNGVIFPPPYKPHGVKMLYKGQPVDLTPEQ
EEVATMFAVMKDTDYASKKQFIENFMHDWRLMLGKNHIIKKFELCDFTPIYEWHLKEKEK
KKQMTSEEKKVAKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKQ
RIRPKDITINIGKDAPIPECPIPGERWKEIKHDNTVTWLAFWNDPINPKEFKYVFLAASS
SLKGQSDKEKYEKARLLKDYIQNIRANYTRDFNSKDPTKRQIAVATYLIDKLALRAGNEK
DDDEADTVGCCTLKVENVELVPPNKLKFDFLGKDSIRYLNTVEVEPPVYKAIGDFQTAKR
SNGGKKDKGDDLFDLLDTSKLNTHLKELMPGLTAKVFRTYNASITLDAILNKETKDGTAP
EKIAVYQHANKEVAIICNHQRSVSKSHENQMSKLNEKINDLKAQREELSKDLNRARKGKP
PLKDKEGKTKKNLAPEAIGKKIAQLDAKIEKMEIDKQIKEDLKTVALGTSKINYLDPRIS
VAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPNFRF
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcatggttgcatcaatgcagttatgaatgacagcgaagaagatgatgatgca
cctttggtttttaggagggcaaactcttcatcaaagcaacgtcacttgagctctacttca
aagaagactgatactcaaaaggatgccggctctaatcttgtttctaaccaaattgctcag
aatggtgagagctcacatttgcaaaatgttaagttactctctaaggcatctagtgagaag
cctcctttggctcgcccaaatgtgggatctttgcaacctgcatcccacaataaattaata
accaatgatgcaaatctgaaacccaaggatggattatctgattcagatgatgataaacca
ttaagccatacacttaactcgacatctgtagctgttcagagaaaacgttccatggaagta
gagaaaatatgcatgcattctaaaggggataactttacaagtggaagtgcaggaaacatg
gatttgagcaagtcaaacataaaaagtgagaattctgatgatgataaaccattgagtttg
aaatactcttcatctggtatagtcaacagaagtgcctcattacaggccgtgaaggcttct
caaagtacaaagcctttacctctatctgtgaaattaacttcaaagaccaaagaagaatct
gatgactcggaagatgaaaaaccacttctttccaggtttcagtccaaggcaattggtggt
tcatctatgaaagactccaatgtagctgagaagtcatcttccaagtcgaagttaaatggt
tctgacaagaaggacaaaagcagtgatgagaactctgccaagggtggtcaaaagcggccc
ctttctggtgccaatcctgctgattcttcatcaattaagaaatcaaaactttcagattct
tcagcttctgtgaaggttaaacaggaagattttgttaagaaagaaagtaaaacacatgat
aatgatcacttaccaattgcacaaagaatgaaaaaaacagtgtcatctaacagtgcatca
atcagcaagaatgcattgcacaaaactactagctcgtcactcaagaagagtaacgttaaa
atgaagaaaaagatgaaggattctaaattttccaagtcattgaagatgcctccgggttct
ggtggggggcagaaatggactaccttggagcacaatggtgttatatttcctcctccttac
aagcctcacggggttaaaatgctatataagggacaaccagttgatttgacacctgaacaa
gaggaggttgcaacaatgtttgctgtcatgaaggacacagattatgctagcaaaaagcaa
tttattgaaaactttatgcatgactggcgacttatgcttggtaaaaatcacatcattaag
aagttcgagctatgtgattttaccccaatatatgagtggcatctaaaagagaaggagaag
aagaagcaaatgacttccgaggaaaagaaggttgcaaaggaagaaaaattgaaacaagag
gagaaatacatgtgggctattgttgatggtgtgaaagagaaggttgggaacttcagagtc
gaacctccagggttattccgaggccgaggagagcatccaaagatgggcaagttgaaacag
agaattaggccaaaagatattacaatcaacatagggaaagatgcaccaattccagaatgc
ccaatacctggtgaaagatggaaagaaataaagcacgataacactgttacatggttggca
ttctggaatgatccaatcaatccaaaagaattcaagtatgtttttctggcagcgagtagt
tcattaaaagggcaaagtgataaagagaagtatgagaaagccaggctgctgaaggattat
atacaaaatatccgtgcaaactatacaagagatttcaatagtaaagatccaactaagcga
caaattgcagtggcaacttatcttattgataagctagcacttagggcaggcaatgaaaag
gatgatgatgaggctgatactgttggttgctgtactttaaaggtggagaatgttgagctg
gtccctccaaataagctgaagtttgacttcttaggtaaagattctattcgatacttgaac
actgtggaggttgaaccacctgtctataaagcaattggcgattttcaaaccgctaaaagg
agtaatggtggtaagaaagacaagggtgacgatctgtttgacttgttggacacaagcaaa
ctcaacacacatctcaaggaactcatgcctggacttactgcaaaagttttccgtacatac
aacgcttctatcacattggatgctatattaaataaggaaactaaggatggcaccgcacct
gagaaaattgcagtctatcagcatgcaaacaaagaagttgcaattatctgtaaccatcag
cgcagcgtctccaagtctcatgaaaatcagatgtctaagttgaatgaaaagataaatgat
ttgaaggcacaaagggaggaattgtcgaaggatctgaacagggctaggaaagggaagcct
ccactcaaagataaagaaggaaagacgaagaaaaacttggcccctgaagcgatcggaaag
aagattgctcagcttgatgcaaagatagaaaagatggaaattgataaacaaataaaagag
gatctgaaaacagttgcacttggtacatcaaaaatcaattacctagatccgagaatatcg
gtcgcatggtgcaagagacatgaagttccaattgagaagatattcaacaaatcactacta
gcgaaatttgcatggtcaatggacgtagatcccaacttcagattctag
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