Zingiber officinale (ginger): 122036187
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Entry
122036187 CDS
T08725
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122036187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122036187
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122036187
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122036187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
122036187
NCBI-ProteinID:
XP_042451372
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MSWLLNSTLNGSTSNLADSSGRPYTTLFSGQSAAVPGFHPSGGLQGLHNIHGSFNLPNVP
GSLASREAAMGVVPSGGVQQPGGSIPSGRFSSNNLLVALSQMPHGSGVTNRGGINVVGNH
AFNSSNINGVTGSITGISSSSASGNRSSVPGFGVSPVLGNVGPRLASSVGNIVGSGNMGR
SISSGGLSVPGLASRVNLATNNGSGSLNVQGTNRLISSMLQQATPQMIGMLGSSYPTSGG
SLSRSQGGNNPLSSMGMLNTINAADSSPFDMNDFPQLTSRPSSAGGQQGHLGAIRKQGVG
VSSIVQQNHEFSIQNEDFPALPGYKGGSSDFSVDLHQKEQLHENISTMQSQHLPFDINQM
TRSGGFSLGGTFQSNLQQQQLHTTTAHTGELPFAPGNTQDLRSHGSDFFPSHGNYHSQIQ
NSGDPSIGLRPLNSPTPASGMSMYEQLIQQYQQPQSLSQLRLQQMSDVSQSYRDQNVKST
QGSQLPPGPFGMLGLLSVINTNDPDLTSLALGIDLTTVGLSLSSTDSLYKTFGSPWSDEP
AKGELEYCIPTCYYAKTPPPLHQLHFSKFQLSTLFYIFYSMPKDEAQLYAASELYAHGWF
YHRDQQLWFTRVPNSEPLVKTHSYERGSYLCFDPNTWSTVLKEHFVLHYEAVEKKPVLPS
DRL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcttggcttctaaattcaactcttaatggttcaacatctaatcttgcggactcctca
ggccgaccctataccacattgttttctggccagtctgcggcagtgcctgggttccatcct
tctggtggtcttcaaggattgcataatattcatggaagcttcaacctgccaaatgtgcct
ggttcgcttgcatccagagaggccgcaatgggtgttgtaccatcaggtggtgttcagcaa
ccaggaggaagcattcctagtggacggttctcatcaaacaatcttttggttgcattatct
cagatgcctcatggctctggtgtcacaaatagagggggtattaatgttgttggaaatcat
gcttttaatagtagtaatattaatggagtcactgggtcaataactggtatttcctcaagt
tcagcttctgggaatcgtagttctgttcctggttttggagtttctccagtattgggtaat
gtagggccaagacttgcaagctctgtaggtaacattgttggcagtggtaacatgggaaga
agcatcagttctggaggattatctgtgcccggtttagcttcacgggtaaacttagctact
aataatgggtcagggagtctcaatgtacaaggaaccaacagattaatcagtagcatgctt
caacaggccacaccgcaaatgattggtatgcttggtagctcttatcctacatcaggagga
tcactatctcggagccaaggtgggaataatcctttaagctctatgggaatgttgaatacc
atcaatgcagctgatagttctccttttgatatgaatgattttcctcaattaacttcaagg
cctagctcagctggaggccaacaaggacacttaggtgcaatacggaagcaaggagttggt
gttagctccattgtccagcaaaatcatgaatttagcatacaaaatgaagatttcccagct
ttgcctggatataaaggtggtagctctgatttttcagtggatttgcatcaaaaggagcaa
cttcatgaaaatatttctaccatgcagtcgcaacatttaccctttgatatcaaccagatg
acacgatctggcggatttagcttaggaggaacttttcaatctaacctgcagcaacagcag
ctgcatactaccacagcccatactggtgagctgccttttgcccctggaaacactcaagac
ctacgttcacatggctctgatttctttccttctcatggtaattatcattcacagattcaa
aacagtggagaccctagtattgggttgagaccgttgaactctcctacaccagcttctggt
atgagtatgtatgagcaactgattcagcaatatcaacaaccacaaagtctttctcaactt
cgactacagcagatgtctgatgttagccagtcatatagagatcaaaatgtaaagtccact
caggggtcacaattaccgcctggtccatttggcatgcttggattattgagtgttattaat
acgaatgatccagatctaacatctcttgcattgggaattgatttaacaacagtaggactg
agcttgagctctacagatagtctttataaaacatttggttctccatggtctgatgagcct
gccaagggggagcttgagtactgcattccaacatgttattatgccaaaacaccaccacct
ctacatcaactacatttctccaaatttcagctatcaaccctgttttacatcttctacagc
atgccaaaggatgaagctcaactttatgcagcttctgaactgtatgcccatggatggttc
taccacagagatcaacagttgtggtttacaagagttcccaactcggagcctcttgtcaag
acacattcttatgaaagaggatcatacctttgttttgatccaaacacgtggagtacagtt
ttgaaggagcactttgttttgcattatgaagcagtggaaaagaaaccagtactcccttct
gatcgcctttag
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