KEGG   Zingiber officinale (ginger): 122036374
Entry
122036374         CDS       T08725                                 
Name
(RefSeq) bromodomain and WD repeat-containing protein 3-like isoform X1
  KO
K11797  PH-interacting protein
Organism
zof  Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:zof00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    122036374
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122036374
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR90_POC16_2nd NBCH_WD40 Bromodomain Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_HPS5 VPS8_N Agenet
Other DBs
NCBI-GeneID: 122036374
NCBI-ProteinID: XP_042451600
LinkDB
Position
Unknown
AA seq 1712 aa
MAPSKCKPSGDETSINVTPLKFSRRMLEKFNSIDQRTTQEIDIREVYFLIMHFLSAGPCK
RTYGQLWNELLEHKLLPRRYHAWYSRSGAPSGDEDDDGLSLPLCYIKLTQRYPHIEKDHL
VKLLKQLLVNSSPLPGVIGGVPSAAVFPMLMGSGSFSLLASDRDKEIKCSKKLPRYLRWP
HMHAGQVHGLSLREIGGGFTKHHRAPSIRAACYAIAKPSTLVQKMEIIKKLRGHQNAVYC
ATFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNAVVASSANDFI
IRVWHLPDGHPISVLKGHTAAVTAIAFNPRPAAVYQLLSSSDDGTCRIWDARQSSAKPRI
YIPKPLDTSAGKTTDPSPSVGQQTHQILCCAFNANGTVFVTGSSDTYARVWNAYKSNMDD
PEQSNQEMDLLCGHENDVNYVQFSGCAVGSRSSVGDALKEDNLPKFKNSWFTHDHLVTCS
RDGSAIIWVPRSRRSHGKVGRWTRAYHLRVPMPPMPAQPRGGPRQRYQPTPRGVNMIVWS
LDNRYVLAAIMDCRICVWNASDGSLLHSLIGHEESTFVLDVHPFNPRIAMSAGYDGKMII
WDIWEGTPVRIYEVGRFKLVDGKFSPDGTSVILSDEVGQIFIVATGQGESQKDAKYDQFF
LGDYRPLMQDTSGNALDQETQLTPHRRNIQDLLCDSGMIPYAEPYQSMYQRRRLGIMGIE
WRPSSLKLAVGPTYNANTGDFQALPIVDLEQWVEPLPEIVEAIAWEVENEMQSDDADSEY
NVTDEYSSHAGQESLSSTSCEEAEISADDSRDDNDGKEILRRSRRKKHKSEAEFTTSSGR
RVKRRNFDECNGASVSKSHRPKRSRNGHLKRFKASKSEPSRPQRIAKKNALTFFSKLTSA
STDEEDNEPDSNFSDSESTLPDSKTHSVESERSMKFNPPTRAKAKENIKDALEDTAIPSE
VINKQDNPVIKRKLVLKLPRHVVSGTLTSECPEQDNLSVSLPITNSVVNSHNRPENEITE
TVSSQNEIASHPHLSVDHQASTIKWGEVKQRSSKRQRVGDIITWAAANTNPDDANTIGVD
TIGNTVSEDECQTSISRMQINDNSHERNIAEICVHESDQTENGNPVNHECKVVNESSKIY
EVVSAKTVNYFGSKCSFDVDPQVDKTMKMTYPKIRFKTRGIVPEFNSSFSKLKSTALNNS
RSSEDELVSDSPIPTDQDFDLVADEDEGTSRKSSDPGKSNNISENSEGWTTTNASLFVSN
DDKDLNSCRKMYDAVYKRMKLSKGKENFIVDVQAKQETTSDSVDHDEATLPFGGKIGSSR
RTRSTGGRAPKHDLSYSMNNFDDKNYGSLGASTSRGKSTSGSRNQFLVDEWKSTSKMPVG
LRSVRNRRENYTTSDFRCLDKKSHQSLRKLSWLLLLEHEECYRYIPQKGDKVAYLIQGHR
EYIESYATTEVGPWKSIKGLKAVEFCKVQKLEYASFPGSGDSCCKLTLEFNDPSSCGFKK
TFRVTLPEINGPDFLVERVRFDASIERNWTHRDKCQVWWRDADGSGGTWWSGRILTVKPK
DSEFPDSPWERYVVQYKDDSSGQHLHSPWELHDADTHWEHPCIINATRDKLLNSIAKIEH
ASIGNQDYHGVQKLSQEAQKFEFLNRFPVPLSLEAIKRRLENNYYRTVDALKHDAEVMIL
NADTYVSKRPLPEMKSKIKRLREWVEHTFFSL
NT seq 5139 nt   +upstreamnt  +downstreamnt
atggctcccagcaaatgcaaaccttctggagatgaaacttctatcaatgtgacacctttg
aagttctctagaagaatgcttgagaagttcaattctattgaccaaagaacgacacaggag
attgacattagggaagtttattttttgatcatgcattttttgtcggctgggccatgtaag
aggacatacgggcagctctggaatgagcttttagagcacaaacttttacctagaagatac
catgcttggtattcacgctctggtgcaccaagtggtgatgaagatgacgatggcttgtca
ctgcctctttgctatatcaagttgactcagaggtaccctcatattgaaaaggaccactta
gtaaagcttttgaaacaattattagttaattcatctcctttgcctggcgtgattggagga
gttccaagtgctgctgtttttcctatgctaatgggatctggttctttctctcttcttgcc
tctgatagggataaagagatcaaatgctccaaaaagttaccgcgttatctacgttggccc
catatgcatgctggccaagttcatggactgagtttaagagagataggtggtggcttcaca
aaacaccatcgcgctccatccattcgtgcagcatgttatgcaattgctaaaccatcaact
ttggtacagaaaatggagatcataaaaaagttaaggggacatcagaatgccgtctattgt
gctacatttgatcgttccgggcggtatgtaataactggttcagatgatcgccttgtaaag
atctggtcaatggaaactgcattttgcctagctagttgccggggacatgaaggtgacatt
actgacctggccgtgagttcaaataatgctgtggtggcttcttctgcaaatgactttatc
attagagtttggcatctacctgatggccatccaatatcagtgttgaaagggcacactgca
gctgtgactgccattgcctttaatcccagaccagctgctgtttatcagctactctcatcc
tctgatgatggaacatgtcgtatatgggatgccagacaatcaagtgcaaagccacgtatt
tacatcccaaagcctttagatacttcagctggaaagaccactgatccttcccctagtgtt
ggtcaacaaacacatcagattctttgttgtgcattcaatgctaatggaactgtatttgtt
actggtagctctgacacatatgctcgggtatggaatgcttataagagcaatatggatgac
cctgagcaatcgaaccaggagatggatcttttatgtggccatgagaatgatgtcaattat
gtgcaattcagtggttgtgctgtggggtctagatcttctgtcggtgatgctttgaaagaa
gataatcttcctaagtttaagaattcctggttcactcatgaccaccttgttacctgctca
cgtgatggcagtgcaattatttgggtcccaaggtcccgacgatctcatggcaaagttggg
cgctggactcgtgcttatcatcttagagtccctatgccacctatgcctgcccaacctcgt
ggtggtcctcgtcagagatatcaaccaactcctcgtggtgttaatatgatagtttggagc
ttggataatcgttatgtgcttgctgctatcatggattgtagaatatgtgtctggaatgct
tctgatggtagcttactccattcattaattggccatgaggaatctacgtttgttttggat
gtgcatcctttcaatccacggatagctatgagtgctggctatgatggtaaaatgatcatc
tgggatatatgggagggtacaccagtgcggatatatgaagttggtcgtttcaagttggtt
gatgggaaattctcaccggatggaacttcagttattctctcagatgaagttggtcagata
tttattgtggcaactggtcagggagagtcacaaaaagatgccaaatatgatcagttcttt
cttggagattatcgaccccttatgcaagatacaagtggaaatgcactggatcaggaaacc
caacttacaccccacaggaggaatattcaggatcttctctgtgattcgggtatgattcca
tatgctgaaccttatcagagcatgtatcaaagacgccgcttaggtatcatgggtattgag
tggcgtcctagttcattgaaacttgcagttggtccaacttacaatgctaatactggtgat
tttcaagcactaccaattgtggatctagagcagtgggttgagcctttaccagagattgtg
gaagctatagcttgggaagttgaaaatgaaatgcagagtgatgatgccgattctgaatat
aatgtaactgatgaatattctagccatgcaggtcaagaaagtttgagcagtacctcatgt
gaagaagcagaaatcagtgccgacgatagtagagacgataacgatggaaaggaaatcctt
aggagatctagaaggaaaaaacacaaatctgaagctgagttcacaacttcatctggtagg
cgggtaaaaagaagaaactttgatgaatgcaatggcgcttctgtgtcaaaatctcacaga
cctaagaggtcccggaatgggcatttgaaaagatttaaggcctctaaatccgagccttca
aggccacagagaattgctaagaagaatgctctcactttcttctctaaattaacaagtgct
tctacagatgaagaagataatgagccagacagtaatttctctgatagtgaatcgacattg
ccagattcaaagacccacagtgttgagtctgaaagatcaatgaaattcaatccacctact
cgtgcaaaggcgaaggaaaacatcaaagatgcacttgaagacactgcaataccttctgaa
gtcatcaataaacaggataatccagtaatcaaaaggaagttggtccttaagctgccacgt
catgttgtctctggaactttaacatctgaatgccccgaacaggataatttgtctgtatcg
ttgcctataactaattctgttgtcaatagccataatagacctgaaaatgagataactgaa
acagtcagttcacagaatgaaattgcctcccaccctcatctttcagtggatcaccaggcc
agtacgattaaatggggagaagttaagcagcgctcttcaaaacgccaaagagtaggcgac
atcataacttgggctgctgcaaatacaaacccagatgatgctaacacaattggagttgac
accattggaaatactgtatctgaggatgagtgtcaaacatcaatttctaggatgcaaatt
aatgataatagtcatgagagaaatatagcagaaatttgtgttcacgagtcggaccaaaca
gagaatggcaatcctgtgaaccatgaatgcaaggttgttaatgaatcatccaaaatatat
gaagtggtttcagctaaaactgtaaattattttggtagcaagtgtagttttgatgtggat
cctcaggtagacaaaactatgaagatgacttacccaaagatacggttcaagactagagga
atagtaccagagtttaatagttcattctccaagttaaaatctacagcacttaacaattcg
aggagctcagaggatgagcttgtctcagacagtcctatcccaactgaccaagattttgat
ttggttgctgatgaggatgaaggaaccagcagaaagagttcagaccctggcaaatcaaat
aatatatcagaaaattcagaaggatggacaaccacaaatgctagtttgtttgtttccaat
gatgacaaagacttgaattcctgccggaaaatgtatgatgctgtatataagaggatgaag
ttgtccaaggggaaggagaattttattgttgatgtccaagccaagcaagaaactacttca
gattctgttgaccatgatgaggcaacattgccgtttggtggtaaaattggaagttctcgc
agaacaagatccacaggtggaagggcacctaaacatgatctaagctatagcatgaataat
tttgatgataaaaattatggttctcttggagcgtccacgagcagaggaaagtctacatct
ggttcccgtaatcaatttttagttgatgaatggaaatcaacatcaaaaatgcctgttggt
ttaagatctgtaagaaacagaagggagaactacactacaagtgatttcagatgtttggat
aagaaaagccatcaatcattgcgaaaactttcatggcttttattgttagagcatgaggag
tgctatagatatattccccaaaagggtgataaagttgcctatctgatacagggccaccgt
gagtacattgaaagctatgctacaactgaagtaggtccatggaaatcaatcaaaggctta
aaagctgtcgagttttgcaaagtacaaaaacttgaatatgcttcatttcctggatctggt
gatagctgctgcaaactcacccttgaattcaatgatccttcatcttgtggattcaagaaa
actttccgagtcacattgcctgaaatcaatggtcctgactttctcgtggaaagagtacgc
tttgatgcttccattgaaaggaactggacccacagagacaagtgccaggtatggtggagg
gatgctgatggatctggtggaacttggtggagtggtcggatcttaactgtaaaacctaaa
gattctgagtttccagatagcccatgggaaagatatgtagtacagtacaaggatgattct
tctggacagcatttacatagtccttgggaacttcacgatgctgatactcattgggaacat
ccttgtattataaatgcaaccagagacaaacttttaaattctattgctaagatagaacat
gcatcaataggaaatcaggattatcatggtgttcagaagctaagtcaggaggctcagaaa
tttgagttcttgaacagattccccgttccactttctcttgaagcgatcaagaggagactt
gaaaacaactactatcgcactgtggatgcactgaagcatgatgccgaagtgatgattttg
aatgctgatacgtacgtcagcaagcgccccctcccagagatgaagtcaaagattaagagg
ctaagggaatgggtcgagcatacatttttttcgttgtag

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