Zingiber officinale (ginger): 122036398
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Entry
122036398 CDS
T08725
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122036398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122036398
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122036398
Spliceosome [BR:
zof03041
]
Complex C
Other components
Step II factors
122036398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
Sigma54_activ_2
nSTAND3
Cas3-like_C_2
AAA_16
TsaE
Flavi_DEAD
ABC_tran
PhoH
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
122036398
NCBI-ProteinID:
XP_042451627
LinkDB
All DBs
Position
Unknown
AA seq
1188 aa
AA seq
DB search
METVDLKGLEYYSLLSNVCKELESHIGSGDKVLAEFITDLGRDSETVDDFETKLKEFGAG
DMPDYLVRSLLTMIHAILPPTFKTNKKSAPDGDEKSSAFPALSRADDRDRARELRLEIEK
DAELKVEEERRKFDRDRDLERDRERDERHRNDRDRERDRGRDRDRNRDWNRDRDRERDRD
RYGERDRDRERDHRWKKHSNYRVHEEDEKEEEEVEEHRERRHPTQPRRTSDEPELYSVYK
GRVSRVMDTGCFVQLNDLRGKEGLVHVSQIASRRIANAKDAVKRDQEVYVKVISVSGQKL
SLSMRDVDQKTGKDLLPMRKSSQNEAYMGNPASGNGGSTRRLGLSGITIVEENEDGPSRR
PLKRMSSPERWEAKQLIAAGVMDVRDYPMFDDDGDGILYQEEGAEEEIEIELNEDEPAFL
QGQSRYSIDMSPVKIFKNPEGSLGRAAALQSALIKERRELREQQQRTMLDSIPKDLNRPW
EDPMPETGERHLAQELRGVGLSAYEMPEWKKDAYGKTVTLGQRSKLSIQEQRQSLPIYKL
KKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRV
AEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILVDETLSQYSVIMLDEAHER
TIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYAK
QPETDYLDAALITVLQIHLTEPEGDVLLFLTGQEEIDHACQSLYERMKGLGKNVPELIIL
PVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKLG
LDSLVITPISQASAKQRAGRAGRTGPGKCFRLYTESAYRNEMSPTTIPEIQRINLGMTTL
NMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLS
KMLLASVDLGCSDEILTIIAMITTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYE
AWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLTIMDRYKLDVVSSGKNFTKIRKAITAG
FFFHTARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDP
KWLVELAPRFYKTSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgtagatttgaaggggctggaatactactccctgctttccaatgtatgcaag
gaactggaatctcacatcggctccggcgacaaagtactggcagagttcatcaccgatctc
ggccgcgactctgagaccgttgatgattttgaaactaagctaaaggagtttggggctggc
gatatgcctgactacctcgttcgctccctcctcaccatgatacacgccatccttcccccc
acgttcaagaccaacaagaaatccgctcctgatggcgacgagaaatcatccgccttcccc
gctctctcccgagcagatgaccgagatcgagccagggagctccgtttggagatcgagaag
gacgccgagctcaaggtggaggaagagcgcaggaaatttgaccgggatagggacctcgaa
cgtgaccgtgagcgggatgaacggcacagaaatgatcgtgatagagaaagagataggggc
agagatagagatcggaatcgggattggaacagagatcgggacagggagagggacagagac
agatacggagaaagggatagagacagagagagggatcatagatggaagaagcacagcaat
tatagagttcatgaggaagatgaaaaggaggaagaagaggtggaggaacacagagagagg
aggcatcctactcagcctcgcagaacttctgatgaaccagagctttattcggtctacaaa
ggaagagtttcgcgggttatggacactgggtgcttcgtccagctgaacgacttgagggga
aaggaaggtttggtccatgtctcccagattgccagtaggaggattgccaatgcaaaagat
gcagttaagagggaccaagaagtttatgtgaaggtcatttcggtgtcagggcagaagctt
agcttatccatgagggatgtagatcagaaaactggaaaagatcttcttccgatgaggaag
agctcacaaaatgaagcttatatgggaaacccagcaagtgggaatggaggctcgacgagg
aggttaggtctttcggggattactattgtagaggagaatgaagatggaccatcaaggcga
ccactcaagagaatgagctcacctgagagatgggaggcaaagcagctcattgctgctggt
gttatggacgtccgtgactatccaatgttcgatgatgatggggatggaatattgtatcag
gaagagggtgctgaggaggagatagagattgagctcaatgaggatgaacctgccttcttg
caggggcagagtcgttattcaattgatatgtcacctgtcaaaattttcaagaacccggag
ggatctttgggcagggctgctgcgctgcagtcggccctcatcaaggaaagaagggagtta
agggagcagcagcagaggacaatgctagactcaattcctaaagatctcaatcgtccctgg
gaagatccaatgccggaaactggcgagcgacatcttgcacaggaacttaggggagtggga
ttgtcagcatatgagatgccagagtggaagaaagatgcttatggaaaaactgtaacgctt
gggcagagatcaaagttgtcaatacaggaacaaaggcagagccttcctatttataaattg
aaaaaggagttggttcaagctgtgcacgacaatcaggttcttgttgtgattggtgagacc
ggctcagggaagacaacacaggtgactcagtatcttgctgaggcaggatacacaacaaga
gggaaaattgggtgcacacaacctcgaagggtggcagccatgtctgttgcaaagcgggta
gctgaagaatttggttgtcgcttgggtgaggaggttggttatgctattaggtttgaagac
tgtactggccctgagactgtgatcaaatacatgacagatggtatgcttctccgggagatt
ttagttgatgaaactctatcacagtactcagtaattatgttggatgaagctcatgaaagg
accatccatactgatgttctctttgggttgctaaagcagcttgtgaagcgaagaccagac
cttcggttgattgtgacatctgccacgctagatgcagagaaattctctggctacttcttt
aactgcaacattttcaccattcctggaagaactttcccagtggagatactttatgccaag
caaccggaaaccgattatttggatgcagcactaatcaccgttttgcagatacacttgaca
gaacctgaaggagatgtacttctcttcttgactggccaagaagagattgatcatgcctgc
cagtctctgtatgagagaatgaaagggttaggaaaaaatgtgcctgagttgataatcttg
ccggtatacagtgcacttcccagtgaaatgcagtccagaatttttgatcctgctcctcct
gggaagcggaaagtggttgtggctaccaacattgcagaagcttccttgaccattgatggt
atttactatgtcgtggatcctggctttgctaaacaaaatgtctacaacccgaagcttggg
cttgattcactggttattacacccatctcacaagcttctgcaaagcagcgagctggtcgt
gctgggcgtacaggtcctggtaaatgtttccgactatatacagagagtgcttaccgcaac
gaaatgtctccaacaacgattccagaaatccagaggatcaatcttggcatgacaactctt
aatatgaaggctatgggtataaatgacttactatcctttgatttcatggatcctccatca
cctcaagccctcatttctgcgatggagcaactatatagtcttggagcccttgatgaggaa
gggctcctgacaaaattgggtagaaaaatggctgagttcccattggatcctcctttatca
aaaatgcttctcgctagtgtggaccttggatgcagcgatgaaattttgaccataatagca
atgattacgactgggaacattttctacagaccgagagagaaacaagcccaggcagatcaa
aaaagagcaaaattctttcagccagaaggggatcacttaacactgcttgctgtatatgag
gcatggaaagctaaaaacttttcagggccttggtgctttgagaattttgtgcagtcccgt
tcgcttaggagagctcaggatgtgaggaaacagcttcttactatcatggacagatataag
cttgatgttgttagttctggcaaaaatttcacaaaaataaggaaggcgataacagcgggt
ttcttttttcacaccgcgaggaaggaccctcaagaaggctacaggactctagtggaaaac
caacccgtgtacatccaccccagcagtgctctatttcaaaggcaaccagactgggtgatc
tatcatgagcttgtcatgacaaccaaggaatacatgagggaagttacagtcatcgacccc
aagtggttggttgaattagctccaagattttacaaaacttcagatccgacaaagatgagt
aaacggaagcggcaggagcgtatcgaaccactatatgaccgatatcacgagcctaactcg
tggcgtttgagcaagcgccgagcttga
DBGET
integrated database retrieval system
