KEGG   Zingiber officinale (ginger): 122036403
Entry
122036403         CDS       T08725                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03030  DNA replication
zof03410  Base excision repair
zof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122036403
   03410 Base excision repair
    122036403
   03420 Nucleotide excision repair
    122036403
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zof03032]
    122036403
   03400 DNA repair and recombination proteins [BR:zof03400]
    122036403
Enzymes [BR:zof01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     122036403
DNA replication proteins [BR:zof03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    122036403
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      122036403
SSDB
Motif
Pfam: POL2_thumb DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2 NRIP1_repr_4
Other DBs
NCBI-GeneID: 122036403
NCBI-ProteinID: XP_042451635
LinkDB
Position
Unknown
AA seq 1258 aa
MNARGRWRGRSSVARNSAKQNLHLNHEELLERKLGFDLYTEGDKKLGWLLTFSPSSWEDQ
ETNKMYSCVDLYFVSQDGSTFKVKHKFPPYFYAATKHKMEFEIEAYLKRRYEGEIADIVI
VEKEDLDLKNHLSGLRRSYLKLSFDTVQQLMRVKNDLMHVAERNKSKLEASEAFETIFIG
ESKERSQDLLDCIIDLREYDVPYHVRYAIDNDVRCGQWYDISVSSDGILLEKRADLLQRA
EVHVCAFDIETTKLPLKFPDAEHDLIMMISYMIDGQGFLIINRECVGEDIEDLEYTPKPE
FEGCFKVKNVKNEKELLKTWFAHMQEIKPSVYVTYNGDFFDWPFLETRASHNGIKMNEEI
GFQCDNHQGECRSKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYNPLEVNPEDMVR
FAVEQPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLM
VQAHKANVICPNKHQSDSEKFYKNRLLECETYIGGHVECLESGVFRSDIPIKFQFDPSAY
ELLMRNLDRDLQHAITVEGKVDIDSIANYEDVKTAIMEKLVYLRDHPTCEQCPLIYHLDV
AAMYPNIILTNRLQPSSIVSDVVCTACDFNRPGKNCLRKLEWVWRGETYMAKKSDYYHMK
KQIESELVENSDGMSVPFLELPKSEQQLRLKERLKKYCQKAYKRVLDKPITEVRDAGICM
RENSFYVDTVRSFRDRRYEYKDLNKYWKGKLADSKACGNQMKIQEAQDMVVLYDSLQLAH
KCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWCAL
PGSFPENFTFKTKDGKKKITRSYPCVMLNADVARNNTNDQYQTLKDAISKTYTTHSECSI
EFEVDGPYKAMILPASKAEGILIKKRYAVFNHDGSLAELKGFEIKRRGELKLVKVFQAEV
FDKFLHGSTLEECYAAVASVADSWLDLLDNQGIDIADSELLDYISESSTMSKSLVNYGEQ
KSLAVTTARRLADFLGDEMVKDKGLHCQYIVAREPQGSPVSERAIPVAIFETEPEIAKFY
LRKWCKISSDVSIRTIVDWSYYKQRLSSNIQKIITIPAAMQKVPNPVPRVIHPDWLHKKV
CEKEDRFRQRKLVDIFNAARKDEMAHDKIFDVDIEEILSKEDDRAVPPQPVVHSYESNKK
YSSQSSSSGAKFSNIVKQDLFIENCSSDIVNKATNYQAWLEMKKRKWKATREEKKRRR
NT seq 3777 nt   +upstreamnt  +downstreamnt
atgaatgcccgtggtcggtggagaggaaggtccagtgttgctagaaattcagcaaagcaa
aatctccatctgaaccatgaggaactgcttgagcgcaagttggggtttgatctctatact
gaaggtgataagaagcttggttggttactcacattttcaccatcatcatgggaggatcaa
gaaactaacaagatgtacagctgcgtggatctttactttgtttctcaggatggatctacc
tttaaagtgaaacataaatttccaccttatttctatgctgccaccaagcataagatggag
tttgaaattgaggcatatcttaagcgaagatatgaaggagaaattgctgatattgtcata
gtggagaaagaggatttggatttaaaaaaccatctttctggtttgcgcaggtcgtatttg
aagcttagctttgacactgtccaacaactgatgcgtgtaaagaatgatcttatgcatgtg
gctgaaaggaataagtcaaaattagaggcttcagaagcatttgaaaccatatttattggt
gaaagtaaggaaagatcacaagatctgttggactgcattattgaccttcgtgaatacgac
gttccatatcatgtacgttatgctattgacaatgatgttagatgtggtcaatggtatgat
atatctgtgtcaagtgatggtattttacttgagaaaagggctgatcttcttcaacgtgca
gaagttcatgtatgtgcatttgatattgaaactacaaaactgcctttgaaatttcctgac
gctgagcatgatctcataatgatgatatcctacatgatagacggacaaggtttcttgata
atcaaccgagagtgtgttggtgaggatattgaagatctggagtatactccaaaaccagaa
tttgaaggctgcttcaaagttaaaaatgtgaaaaacgagaaagaacttttaaaaacatgg
tttgcacatatgcaagagattaagccaagcgtatatgttacgtacaatggtgattttttt
gattggccattcctagagacaagagcctctcataatggtattaagatgaacgaggaaatt
ggtttccagtgtgacaaccatcaaggggaatgtcgttccaaattttcgtgtcatcttgac
tgttttgcttgggtcaaacgtgacagttaccttcctcaaggaagccaaggtcttaaggct
gtcacaaaggctaaattgggttacaatccattggaagtaaatccagaggacatggttcgt
ttcgccgtggaacaacctcagatgatggcttcatattctgtgtctgatgctgttgcaaca
tattatctatacatgacatatgttcatccatttatattctctcttgcaactataattcct
atgcccccagatgaagtccttcgaaaaggaagtggaacactttgtgaaatgctacttatg
gtacaggctcacaaggcaaatgttatttgtcctaacaaacaccagtcagactctgagaaa
ttctacaagaaccgtcttctagaatgtgagacatatattggtggccatgttgaatgtctt
gaaagcggtgtctttagatcagatattcctatcaagtttcagtttgatccatctgcctat
gagctattaatgagaaatctggatcgtgatctgcaacatgcaatcacagtagaggggaaa
gtggacattgactcaattgcgaattatgaagatgtaaaaactgctataatggaaaagctt
gtctacttacgggatcatccaacatgcgagcaatgccctctaatttatcatcttgatgtt
gctgcaatgtatccaaatattattttaacaaatagacttcagccttcatccatagtttca
gatgtagtctgcactgcatgtgattttaatcgtccagggaaaaattgcctacgcaagctt
gaatgggtttggcgtggagagacctacatggccaaaaagagtgattattatcatatgaag
aaacaaattgagtcagagctggttgaaaacagtgatggtatgtcagtgccctttcttgaa
ctcccgaaatcagaacaacagttgaggctgaaagaacgcttgaagaagtactgtcagaag
gcttataagagggttctggacaagccgataacagaagttagagatgcagggatatgtatg
cgtgaaaattcattttatgtggacacagttcgaagtttccgagacaggaggtatgagtac
aaggatcttaataagtattggaagggtaaattagcagattcaaaagcttgtggaaatcag
atgaagattcaggaagcacaggatatggttgttctctatgattccttacaacttgctcat
aaatgtatactcaattctttttatggatacgtgatgcgcaaaggcgcaagatggtattca
atggaaatggcaggagttgttacctatactggagcaaagattatacaaaatgctcgttta
cttgttgaaaagattgggaggccacttgaactagatacagatggcatttggtgtgcactt
cctggatcttttccagaaaactttacattcaaaaccaaggatgggaaaaaaaagatcaca
agatcatatccctgtgttatgcttaatgccgatgttgcaagaaacaacactaacgatcaa
tatcagacgcttaaagatgctattagcaaaacttataccacacacagtgaatgctccatt
gaatttgaagttgatgggccatataaggcaatgatacttcctgcttcaaaagcagaaggg
atattgatcaagaaaagatatgcagtttttaatcatgatggctctcttgctgaacttaaa
ggctttgagatcaaacgcagaggtgagctgaagcttgtcaaggttttccaggcagaggtt
tttgataaatttctccatggttcaaccttagaagaatgttatgcagctgttgcatctgtt
gcagacagttggttagatttattagataaccaaggcattgatattgccgacagtgagctt
cttgattacatatcagagtcaagcacaatgagcaagtctttggtcaactatggggagcaa
aaatcattggcagtaactactgcaagaaggcttgctgattttctgggagatgaaatggtg
aaagacaaaggacttcattgccaatacatagttgcccgtgaaccacagggttctccagta
agtgagcgtgcaatacctgttgcaatatttgaaacagaaccagagattgctaaattctat
ctacgcaaatggtgtaaaatatcttctgacgtgagcatccggacaattgttgattggtct
tattacaagcaacgtctaagttcaaatattcaaaaaattatcaccattcctgctgctatg
cagaaggttcctaacccagtacctcgggtgatccatcctgattggttgcacaagaaagtt
tgtgagaaagaggatagatttcgtcaacgcaaacttgttgatatctttaatgcagcaagg
aaagatgagatggctcatgacaaaatttttgatgtggatatagaagaaattttgtccaaa
gaagatgatagagcagtcccacctcagccagtagttcatagctatgaaagtaacaaaaag
tattcaagccaatcatcttcatctggagcaaaattttctaatattgtgaagcaagatctc
tttattgaaaattgttcaagtgacattgtgaacaaggcaactaactatcaggcttggctt
gaaatgaagaaaagaaaatggaaagccactcgtgaagaaaagaaaaggcgcaggtaa

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