Zingiber officinale (ginger): 122036470
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Entry
122036470 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4-like isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122036470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122036470
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
122036470
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
HECT type E3
122036470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
HEAT_2
Arm
HEAT_EZ
ARM_ARMC5
Htt_N-HEAT_1
Motif
Other DBs
NCBI-GeneID:
122036470
NCBI-ProteinID:
XP_042451726
LinkDB
All DBs
Position
Unknown
AA seq
1502 aa
AA seq
DB search
MDRGRKREGAADLRADKRACSSSDHRPCSSASGSPPPQPPHSEMESSSSGRSDRGGDSGY
GSCDSDDYAGGYDSRSVRGRLHRVLVGLADDGSGGSEQLAALTELCEVLSFCMEDAMGYF
PVESVVPPLVKLAGHESNPEVMLLAIRALTYLCDSMPRSADAIVRHGALPVLCGRLLAIE
YLDVAEQCHQALEKISRKQPIACLQAGTANAVLTYIDFFPSSIQRAAVSTIANMCKKLPP
DCSSSIIESVPTLCALLQNEDTKLVETVAICLARIADSIGSSSNLLDELCKLGLIQKSLE
LITNDGHRTLSRVTYSGLIALLTKLAGNSQLAVQTLFELNISRTLRNVLLGSDMSDDSAY
ASTEDLQINQVYEVLKLANQLIPPRERDPDNQLTEAKEKIQMVVPNFLDQFATEILPASI
KVVNSDANPYVCYGCVSIISRIAYYSAPDTLLKSIKDINISYFLAGLLLKKDPHILLSTL
ETVEILMQKLPGFFLSSFIKEGVVHAIDALLSEDKCTEPVLGHSDDQMVVKDISRCLCYS
FALSRVPSSEAKTCKIVKESIHNLGRHIKATYFANGAMSSDMGFTETLQNLKTLCKVLTE
SVDMHLNSDSSLQDEENLTQMLDQVMRAFSQEDPMSTFEFVESGLARSLIHYLSNGKYPL
GTHSVGLSSHILTILKRFQTFAFICLSKPCQSCDNTILVILLKKLQNALSSLDNFPVIVS
QGYKARNTYADIPARCCTMNPCLRVRFVREKAESHLSDYNNVLNVDISSSVDDIEGYLWP
KVSENKNVNLTESMDNNISKLKLTSSRSNHTSEGDSIETHTNISNETCISNSSEVIRSQE
QLLPTETSPLQSTSGVKSGPEITITASPSIGEAKQKLTFSLSGKQLDRSKTLYQAVLEDQ
MSSESHMVVGSRFWNQLYKLTYRVAEDENSSKGQLLDCVSQSNILLNKLGFSWQKLPFFP
TIFQIEMPSNFDKMSSTYDILFMLKILEGLNHFSLELLTDERVGAFAKGKIDNLDDLKVI
IPSVPELGFVNSKLSDKLEQQLRDPLVLTTGYFPSWCSQLMNSCSFLFSFEARWKYFYLT
AFGSLKNQQNSIQHSNSPGTNSSSDSLTYPRKKFKVDRNKILECAMKMMELHVHSKGSLE
VEYDEEVGTGLGPTMEFYTLLSHEFQKAGLGMWREDLCHSVGESGLLSAPFGLFPRPWST
TTGVLGGTEFSDVIKKFLLLGKLVAKTIKDGRILDIPFSRGFYKIMLEQVLSICDIQSFD
SELGRTLLEFQAVINRKMFVESVPGKSHRVPSNLNYRGISVKDLSLDFTLPGYSDYALSS
ESTKLVNIDNLEEYVALVVDATIGSGIERQVDAFKSGFNEVFPLKALKIFNEDELERLLC
GEQDTWDFTELVDHIKFDHGYTMSSPTVINLLEIIQEFGCDQRRAFLQFVTGAPRLAHGG
LAALNPKLTVVRKHGSCDADLDLPSVMTCANYLKLPPYSSKEKMREKLMYAITEGQGSFH
LS
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaggtcggaagcgcgagggcgccgccgacctccgtgcggacaagcgcgcgtgc
agctcgtccgaccaccgcccctgctcctccgcctccggctccccgcccccgcagccgccg
cacagcgagatggagtcctcctcctcggggaggtccgatcgcggcggggactccggatac
gggtcgtgcgactccgacgactatgctgggggttacgactcgcggtccgtgagggggagg
ctgcacagggtcttggttggcctcgcagacgacggctcgggaggatccgagcagctcgca
gcgctgaccgagctctgcgaagtgctctccttctgcatggaggacgccatggggtacttc
cctgtggagagcgtcgtgccgccactcgtgaagcttgctggtcacgagagcaatcccgag
gtcatgcttttggcgataagagcgctcacctacctctgtgattcgatgccgaggtcggcg
gatgccatcgtgcggcatggcgccctacctgtcctgtgcggaaggcttttggctatcgaa
tacttggacgtggcagaacagtgccaccaagcattggagaagatatcgcggaaacaaccg
attgcttgtttgcaagcaggaacagcaaatgctgtcttaacttatattgatttctttcca
agtagtattcagagagctgcagtttcaacaatagccaatatgtgcaagaaactgcctcct
gattgctcttcaagtattatagaatcagtccctactttatgtgcccttctccagaatgag
gatacgaaattggtggaaactgttgctatttgtcttgcacggatagctgactctattggc
tcttcctccaatttgctggatgaactatgcaagcttgggttaatacaaaagtccttggaa
ttaataactaatgatggtcataggacactcagccgtgtaacttattctggtttaattgct
cttctcaccaaacttgctggaaattctcagctagcagttcagaccctatttgagctcaat
attagcagaactctgaggaacgtcttattaggttctgacatgtcagatgattctgcttat
gcatctactgaggatttgcaaatcaatcaggtatatgaagttttaaagttagctaaccag
ttaatccctccaagagagagagatccagacaatcaattaacagaagctaaggaaaagatt
caaatggttgtgcccaatttcttggatcagtttgcaacagaaattcttcctgcttctatt
aaggttgtgaactctgatgcaaatccatatgtatgttatggctgtgtttccatcataagc
cgcattgcctattacagcgcacctgacacacttctgaagtcaattaaagatataaatatc
tcatattttttggcagggctgttgctcaagaaagatccacatatattactttctacactg
gagacagttgagattctgatgcaaaaacttcctggttttttcttaagctctttcatcaag
gaaggagtagttcatgcaattgatgcacttctttcagaagataaatgcacagagcctgta
cttggacactcagatgatcaaatggtagtaaaagatatttccaggtgcctgtgctattca
tttgctttatctagggttccatcctcagaagcaaagacatgcaagattgtaaaagaatct
atccacaatctgggaaggcacattaaagcaacctactttgctaatggagcaatgagctct
gatatgggatttactgaaacccttcaaaatctcaaaactttgtgcaaagtgctaactgaa
agtgtggatatgcatttaaatagtgacagtagtctccaggatgaggagaatttaactcaa
atgttagaccaggtaatgagagctttttctcaggaagatcctatgtcgacctttgagttt
gtcgagagtggtcttgcaagatctctgatccattatttatcaaatggaaagtatccactt
ggaactcattctgttggtttatcaagtcacattctcaccatactaaagagattccagacg
tttgctttcatttgcttatcaaaaccatgtcaaagttgtgacaataccattttggttatc
ttgctgaagaagctgcagaatgcattgtcttcgttggataactttcctgttattgtaagc
cagggttataaggcaagaaacacttatgcagatatccctgctaggtgctgcaccatgaat
ccctgcttaagagttcgctttgtccgtgaaaaagcagagtcacacttgtccgactataac
aatgttctaaatgttgatatttcttcatcggtagacgatatagaaggatatctctggcct
aaagttagtgaaaacaagaatgtaaatctgacagaatctatggataataacatcagcaaa
ctaaaactcacttcttcaaggtcaaatcatacttcagaaggggattctatagagacacac
acaaatatctccaatgagacatgtatttccaactcttcagaggtaattagaagtcaagaa
caacttttgccaacagaaactagtccactgcagtcaacatctggtgtgaaatctggtcca
gaaataaccataacagcatctcctagcataggagaggcaaagcaaaagttaacttttagc
ttaagtggaaaacaactcgaccgctctaagacgctctatcaagcagttctagaggatcaa
atgtcttcagaatctcacatggttgtggggtcaagattttggaatcaattatacaaactt
acttacagagtagctgaagatgaaaactcaagcaagggccaactcttagattgtgtttct
cagtcaaacatcctcttgaataagcttggattctcctggcaaaaacttcctttttttcct
actatatttcaaattgagatgccttctaactttgataaaatgagttcaacatatgatatt
ttgtttatgttgaaaatattggagggcttgaatcacttttctttggaattgttgactgat
gaaagagtcggagcatttgctaaagggaaaatagataaccttgatgatctgaaagtgata
atcccttcagttccagaactggggtttgtgaacagtaaattatctgataagttggagcag
caactcagagaccctctggtgttgaccactggttattttccatcatggtgtagccagtta
atgaattcatgctctttcttattttcttttgaagcaagatggaagtacttctacctcaca
gcttttggttctttgaaaaatcaacaaaatagcatacaacattcaaatagccctggcaca
aactccagcagtgatagcctcacttatccacgcaagaagttcaaagttgataggaacaag
atccttgaatgtgctatgaaaatgatggaattacatgttcatagtaagggttctcttgaa
gtagaatatgatgaagaagtgggtactggtctaggtcctacgatggaattctacacatta
ttaagtcatgaatttcaaaaggctggattgggtatgtggagagaggacctttgtcacagt
gtcggtgaatctggattattgtcagctccatttggactgtttccccgtccatggtcgaca
acaacaggtgtgttgggtgggactgaattctctgatgtgataaaaaagtttctcctcctt
ggtaagctggtagccaagacaatcaaagacggaaggatattggacataccattttctaga
ggcttctataagattatgcttgagcaggtgctgagtatatgtgatatccagtcatttgat
tcggagcttggaaggactttgctggagtttcaagctgttatcaataggaaaatgtttgtc
gaatcagttcctggaaaaagccatagggttccatctaacttaaattataggggtatcagt
gtgaaggatctttctcttgatttcactcttccaggctattctgattatgcactttcctcg
gagagtacaaaattggttaatattgacaacttggaagaatatgttgcgctggttgtagat
gcaacaattggcagtggaattgagagacaagttgatgccttcaagtctgggtttaatgag
gtattccctctgaaagctcttaagattttcaatgaagatgagctggagagactactatgc
ggtgaacaagatacttgggatttcactgagcttgtggatcacatcaagttcgaccatgga
tatacaatgagcagccctactgttatcaatttgttagaaatcattcaagaatttgggtgt
gatcaacgtagggctttcttacaatttgttactggtgctcctcgactcgcacatggtggc
ttagctgcacttaaccctaaactaacagttgttcgcaagcatggtagctgtgatgctgat
ttggatttgccaagtgtgatgacttgtgctaattatctaaagctcccaccttactcttcc
aaggagaaaatgagagaaaaactgatgtatgcgataaccgaaggtcagggatcgtttcac
ctctcgtaa
DBGET
integrated database retrieval system
