Zingiber officinale (ginger): 122036508
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Entry
122036508 CDS
T08725
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122036508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122036508
03036 Chromosome and associated proteins [BR:
zof03036
]
122036508
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122036508
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
122036508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40_Gbeta
Beta-prop_Aladin
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
WD40_RFWD3
MIOS_WD40
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
122036508
NCBI-ProteinID:
XP_042451789
LinkDB
All DBs
Position
Unknown
AA seq
382 aa
AA seq
DB search
MPLTSSQKLPSAFCLLPLTVWCQIREEEEEEEEEAAATAMETSTQESPVSANVFTFDSPH
PVYAMAFSPSSASPRLALGSFVEDYSNRVEVVGFDEDTLAFRPDPALSFDHPYPPTKLMF
HPLSLPLLASVCDSLRLWGLGPDSTELRSVLDNGKSSGYCAPLTSFDWNDVEPRRVGTSS
IDTTCTIWDVDRGAIETQLIAHDKEVYDIAWGEAGVFASVSADGSVRMFDLRDKEHSTIV
YESPRPDTPLLRLAWNKVDRCYMAVTTMDSNRVVVLDIRSPAAPVAELQRHRASVNAVAW
APHAARHICSAADDGEALIWELPAPITVSGSSAAATTAVASEGIDPVLVYSAGAEINQLQ
WSSAHPDWIGIAFSNKVQLLRV
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgcccttgacgtcttctcaaaaactgccttctgccttctgccttctgcctttgaccgtt
tggtgccaaatcagggaggaagaggaagaggaagaggaagaggcggccgcgacggcgatg
gaaacctcgacacaagaatcgcctgtcagcgccaacgtcttcacgttcgactccccccac
cccgtctacgccatggcgttctcgccttcctccgcctccccccggctcgccctcgggtcc
ttcgtcgaggactattccaaccgcgtcgaggtggtcggcttcgacgaggacactctcgcc
ttccggcccgatcctgccctctccttcgaccatccctaccctcccaccaagctcatgttc
caccccctctccctccccctactcgcctcggtttgcgactccctccgcctatggggcctc
ggacccgactccaccgaactccgatctgtcctcgacaatggcaagtccagtggttactgc
gccccccttacctccttcgactggaacgacgtcgagccccgccgcgtcggcacctcctcc
atcgacaccacttgcaccatctgggacgtcgatcgcggcgccatcgagacgcagcttatc
gcccacgacaaggaggtatacgacatcgcctggggcgaggccggcgtcttcgcttccgtg
tcggctgacggatccgtccgcatgttcgacctccgcgacaaggagcactccacgatcgtc
tacgagagccctcgccctgacacccctcttctccgcctcgcgtggaacaaggtcgaccgc
tgctacatggccgtcaccaccatggacagcaaccgcgtcgtcgtgctcgacatccgctcc
ccggcagcccccgttgccgagttgcagaggcaccgcgccagcgtcaacgccgtcgcgtgg
gccccgcacgccgcgcggcatatttgctcagcggcggacgatggcgaagccctaatttgg
gaattgccggctcccattaccgtgtctggttcctcggcagccgcgacgaccgcagtggcg
tcggaagggatagatcctgtcctagtctactcggcaggtgctgaaatcaaccaactgcaa
tggtcttctgcacatcctgattggatcggtatcgccttctccaacaaggtgcagctgctt
agggtttga
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integrated database retrieval system
