Zingiber officinale (ginger): 122037203
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Entry
122037203 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122037203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122037203
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122037203
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122037203
mRNA degradation factors
3'-5' decay
Ski complex
122037203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
122037203
NCBI-ProteinID:
XP_042452594
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MERVVAANEVAFSLGFTGHSGHLHLEPLHPVVRPNSLTSLPDFILPPAFPQETHERMRES
IEENYLHPEVDLDEFSVQNSGRWWHYDWFDRAKLQLEPSEPRFIVAPMWELPFRRSKNSV
IWNPHSVEVDITLLMEGAQELGSMPRMPGPPKEFVRGSTNNRPFRPGGLEGSQALQRSLP
EGAHSGDWVHEVIHGGHAQNVPPSSKNGLDLGSLKEYTCQWTYTSQQIFPEKDSIDEGMN
KHSVQFNYLFKMAWEEDIIEGSSGDGSNQDEIENEDAKVDDIPETLENTILSESSDAEAE
LGGQSAKAKNHDKEVWALLGGNDIIVDHFHELVPDMAIDFPFELDSFQKEAIYYLERGES
VFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDVS
LKPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPSHV
NIVLLSATVPNTIEFADWIGRTKQKKIRVTGTIKRPVPLEHCLFFSGGLFKICENDEFLP
QGFKAVKEVYKKRKSNAVGGPSGVKHVASHFHGGGQPKQFDRSNRERSQKHSGHQNAQNS
LNTSGNQHTSGLRRSESSLWLSLINKLSKNAQLPVVIFCFSKNRVDKSADNMTGTDLTSN
SEKSEIRVFCDKAFSRLKGSDRNLPQVVRVENLLKRGIGVHHAGLLPIVKEVVEMLFCRG
VIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKDFRKLLPGEYIQMAGRAGRRGLDNIGT
VVIMCRDEIPEESDLKQVMVGRPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFH
AQKNLPEKERLLLQKLRQSTKKIECIKGEPTIEAYYEMASEAETYRRQIMEAILQLQSTQ
QLLSPGRLVIVKQLPAEDHLLGVVLKTPAAANKQYIILVLTTATASSMQASCPLNKIQEN
QSFQQGYFITPKGKRGTEEEYFSSITSRKGSGAINIKLPHYGSASGINYAVTEMENKDII
SICNCKMKIDQVRLLEDASNIAYAKTVQELLKQKPDGNKFPPALDAVKDLKLKDMALVQM
YHIYNEFLQNMSENKCHGCTKLNEHIMLMKEQSRHKEEVNALKFQMSDDALQQMPDFQGR
IDVLKEIYCIDSDLVVQLKGRVACEMNSGEELICTECLFENQLDDLEPEEAVAIMSSLVF
QQNNTTEPSLTPKLAYAKKRLYDTAIRLGQLQAQFKLSIDPVEYARDNLKFGLVEVVYEW
AKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNAASIMGNSSLYKKMETASNAIKRD
IVFAASLYVTGV
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgttgtggcggctaacgaggtcgccttcagcttagggtttactggacacagc
ggtcatctccatctcgagccactccatcccgttgtccggccgaactccttgacttctctc
cctgatttcattctcccacctgcttttcctcaagaaacacatgaaagaatgagggagagt
atagaggaaaattaccttcatccagaggtcgaccttgatgagttctctgtgcaaaactct
gggaggtggtggcattatgattggtttgacagggctaaactccagttggagccttcagaa
ccccgtttcattgttgctcctatgtgggagttgccattcaggcgatccaagaattcagta
atatggaatccacattcagtggaggtagacattacattgctgatggaaggtgctcaagag
ttgggatcaatgcctcgaatgcctgggccaccaaaggaatttgtaagaggaagcaccaac
aaccgcccattccgaccaggaggacttgaaggttctcaagctttacaaagaagccttccc
gagggagcacatagtggtgattgggtgcatgaagttatccatggtggtcatgctcaaaat
gtcccccctagctctaaaaatggacttgatctaggtagccttaaggaatatacctgccaa
tggacctataccagccaacagatatttccagagaaggattctattgatgagggaatgaat
aaacactcagtgcagttcaattatttgtttaaaatggcttgggaagaagatatcattgaa
ggatcaagtggtgatggttctaaccaagatgaaattgaaaatgaagatgcaaaagttgat
gatattcctgaaactttagaaaatacgatattgagtgaatcaagtgatgcagaagctgaa
ttaggtggacaaagtgccaaagctaagaatcatgacaaggaggtgtgggctcttcttggt
gggaatgatataattgttgatcatttccatgaacttgttcctgatatggctattgacttc
ccttttgagttggatagcttccagaaagaggctatatactatcttgagagaggtgagtct
gtttttgtagctgctcatacttctgccggaaagactgttgttgctgaatatgcatttgct
ttagcatcaaaacattgcacgagggctgtttatactgctccaataaaaactatcagcaac
caaaagtacagggatttttctgggaaatttgatgtaggccttcttaccggagatgtaagt
ttgaagccagaggcatcttgtcttatcatgactacagagatattgcggtcaatgctttat
aaaggtgctgatatcattagagacatcgaatgggttatatttgatgaagtgcattatgtt
aatgatgctgagagaggagttgtttgggaggaagtgattatcatgcttccaagtcatgtg
aacatcgtcctactttcagcaacggtccctaacacaattgaatttgcggattggattggc
cgaacaaaacaaaagaaaatacgtgtgacagggactatcaaaagacctgttccacttgag
cactgcttgttcttctctggggggttgttcaaaatatgtgagaatgatgagtttttgcct
caaggattcaaagcagtaaaagaagtttataaaaaaagaaagtctaatgctgttggaggc
ccttctggagtgaaacatgttgcttcacactttcatggtggaggccaacccaagcaattt
gaccgttctaatcgagagagaagtcaaaagcattcaggacatcagaatgctcagaattcc
ttgaatactagcgggaatcaacatacttcaggtctaaggagatccgagtcctctttgtgg
ctgtcactcataaacaagctttcaaagaatgcccaattgcctgttgtcattttctgcttt
tccaagaatcgtgttgataaatcagcagataacatgaccgggactgacttgacaagtaat
tctgaaaaaagtgaaattcgggtcttttgtgacaaagcattttcaaggctaaaaggatct
gataggaatcttccacaagttgttcgtgtcgagaacttgcttaagaggggtattggtgtg
caccatgcggggcttcttccaattgtaaaagaagttgttgagatgctcttttgtcggggt
gtcattaaggttctgttctccactgagacttttgcaatgggagttaatgctccagctcga
acagttgtctttgataccttgagaaagtttgatggaaaggatttcaggaagttgcttcct
ggggaatatattcaaatggctggccgagctggaaggagagggttagataatattggtaca
gttgttattatgtgtcgtgatgagattcctgaagaaagtgacttgaagcaagtaatggtt
ggaagaccaactaggcttgagtctcaatttcgattgacatataccatgatattgcatctt
ctccgtgttgaagaattgaaggtggaggacatgttaaaaagaagctttgcagaattccat
gcacaaaagaatttgccagagaaagagcgacttcttttgcaaaagctacgccaatctact
aaaaagattgaatgcataaaaggcgaacctacaatagaagcatattatgagatggcatca
gaagctgaaacatacagacgacaaattatggaggctatcttgcagttacagtccacccaa
caacttctttctccaggaagactggtgatagttaaacaactaccggcagaagaccactta
cttggtgttgttctgaagactcctgctgctgctaataaacaatatatcattttagtattg
actactgctactgcttcgtctatgcaagcttcatgtcccttgaacaaaatacaagagaat
caaagttttcaacaaggttattttattactcctaaaggaaagcgtggtacagaagaagag
tatttttcatccattacttcaaggaaaggatctggagctataaacataaaattgccccat
tatggtagtgcttctgggattaactatgctgttacagaaatggagaacaaagatatcatc
tctatttgcaattgcaaaatgaagattgatcaagtccgacttcttgaggatgcaagcaac
attgcatatgcaaaaactgttcaggaattgctaaaacagaaacctgatggaaacaaattt
cctcctgctctggatgctgtaaaagatctcaaattgaaagatatggctcttgtgcaaatg
tatcatatttacaatgaatttttgcaaaatatgagtgagaacaaatgccatggttgcaca
aagttgaatgaacatatcatgttgatgaaggagcaaagtaggcacaaagaagaagtcaat
gctttaaaattccaaatgtcagatgatgctcttcagcaaatgccagactttcaaggccgg
attgatgtgctcaaggagatctactgtattgattctgatcttgttgttcaattgaagggt
cgggttgcatgtgaaatgaactctggggaggaactgatatgcacagaatgtttgtttgag
aaccaattggatgatctggaacctgaagaggcagttgcaattatgtcttctcttgttttc
caacagaacaacactactgaaccatcacttactcctaagctggcttatgcaaaaaaaagg
ttatatgatacagcgattagattgggtcaactccaggcacagtttaaactctctattgat
ccagtggaatatgcacgagacaatctcaagtttggccttgttgaagttgtatacgaatgg
gcaaagggaaccccatttgctgatatttgtgaactcactgacgtacctgaaggtctcata
gtaagaactattgttagactggatgaaacatgtcgtgaattcaagaacgcagcctcaata
atgggcaactccagcctttacaagaagatggaaacagcttcaaatgctataaaacgtgac
attgtgtttgcagctagcttgtatgtgacaggagtttga
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integrated database retrieval system
