Zingiber officinale (ginger): 122037919
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Entry
122037919 CDS
T08725
Name
(RefSeq) ubiquitin C-terminal hydrolase 13-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122037919
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
122037919
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122037919
Enzymes [BR:
zof01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
122037919
Peptidases and inhibitors [BR:
zof01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
122037919
Ubiquitin system [BR:
zof04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
122037919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH_2
MATH
UCH_1
Malt_amylase_C
SASP
Motif
Other DBs
NCBI-GeneID:
122037919
NCBI-ProteinID:
XP_042453328
LinkDB
All DBs
Position
1A:148502735..148517464
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AA seq
1119 aa
AA seq
DB search
MTMMTPPPLDQQEDEEMLVPHQEFTEGPQPMEVISAEPATAPENQQVEDPPTFKYRWTIE
NFSRMNTKKLYSDMFFVGGYKWRVLIFPKGNNVDHLSLYLDVADSTTLPYGWSRYAQFSL
AVVNQIHGKYTIRKDTQHQFNGRESDWGFTSFMSLSELYDPSRGYLVNDTCVIEAEVGVR
KVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSI
PLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVV
EGTIQHLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGD
NKYQAENHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRD
NGRYLSPDADRRVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWFKFDDERVTKEDAK
RALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKEKIMCNVDEKDIAEHL
RVRLKKEQEEKEHKKKEKAEAHLYTIIKVARNEDLAEQIGREIFFDLVDHDKVRSFRIQK
QLPFNHFKEEVAKELGIPVQFQRFWLWAKRQNHTYRPNRPLLPQEEAQSVGQLREVSNKA
HNAELKLFLEVELGPDLSPLSPPLKTKEDILLFFKLYDPEKEALRFAGRLFVKALGKPTE
ILPKLIEMAEFPANEEIELYEEIKFEPNVMCEHIDKRISFKSSQLEDGDIICYQKTLTSA
NRDQFRYPDVPSFLEYVRNRQVVHFRSLEKPKEDDFSLELSKLFTYDDVVERVACHLGLD
DPTKIRLTSHNCYSQQPKPQPIKYRGVDHLSDMLAHYNQLPQTSDILYYEILDIPLPELQ
GLKTLKVAFHHATKEEVAIHSIRLPKNSTVADVINDLKNKVELSRPDAELRLLEVFYHKI
YKIFPLGEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTRDPNQNQMQVQNFGE
PFFLVIKEGEALADVKLRIQKKLQVPDEEFAKWKIAFISLGRPEYLQDSDVVSNRFQRRD
IYGAWEQYLGLEHSDTAPKRAYTTNQNRHTFEKPVKIYN
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgactatgatgacgccgccccctctcgaccagcaagaggacgaggagatgctggttccg
catcaggagtttacggaaggacctcagccgatggaagttatatcagctgaaccggcaact
gcaccagaaaatcaacaggtggaggatcctcctacatttaaatataggtggacaatcgag
aatttctccaggatgaacaccaagaaactctactcggacatgttctttgtcggaggatat
aagtggcgagtgcttattttccccaagggaaataatgtagaccacttgtcactatacctt
gatgttgctgattcaactactttaccatatggctggagtagatatgcacagttctctctt
gcagttgtcaatcaaattcatgggaagtacacaataagaaaagatacacaacatcaattt
aatggacgagaaagtgattggggctttacttcatttatgtctttaagtgaactctatgat
ccgagtcgaggatatcttgttaatgatacatgtgtaattgaggctgaagttggtgtccgt
aaggttgtagattactggagttatgactcaaaaaaagaaactggttatgttggccttaag
aatcaaggagcgacttgttacatgaactctcttctacagactctgtatcatattccatac
ttcagaaaggctgtctatcatatgccaacaacagagaatgatatgccatctggaagcatt
cccttggctcttcaaagtcttttctataaacttcaatatagtgacaacagtgttgcaaca
aaggaattgacaaaatcttttggctgggacacatatgattcttttatgcaacatgatgtt
caagaactcaacagggttctatgtgaaaaactggaagataagatgaagggaactgtggtc
gagggcacaatccagcatttgtttgaaggacaccacatgaactatattgaatgcattaat
gtggactacaaatccactagaaaagaatcattctatgatctacagctagatgtaaagggt
tgtcgggatgtttatgcctcatttgataagtatgttgaggtagagcgactggagggcgat
aataaatatcaagcagaaaaccatgggttacaggacgctaagaaaggtgttctgttcatt
gatttcccaccagttttgcaactccaacttaagcgttttgaatacgatttcatgcgagat
acaatggtgaagataaatgatcggtatgaatttccacttcagttagatcttgatagagat
aatggtagatatctttctcctgatgcagacaggagggttcgtaacctgtatactcttcac
agtgttcttgttcacagtggcggggtgcatggtggacattattatgctttcataagacca
actctatcagatcagtggtttaaatttgatgatgagagggtaacaaaggaagatgcaaaa
agggcgctagaagagcagtatggtggtgaggaagagttaccccagacaaaccctggcttc
aacaatactccatttaaatttactaaatattcaaatgcatatatgcttgtctacattcgt
gaaagtgacaaggagaaaattatgtgtaatgtggatgagaaagacattgctgagcacctg
cgagttagacttaagaaagaacaagaagagaaggagcacaagaagaaagaaaaagctgag
gcccacctttatactatcataaaggtagctcgtaatgaggatttggcagaacaaattgga
agagaaatattttttgatcttgtagaccacgacaaagttcggagctttcgcatccaaaaa
caactgccattcaatcattttaaggaggaggtggctaaagaattaggaattccagtgcag
tttcagcggttttggctgtgggccaagcggcaaaaccacacatatcgacccaatcgtcct
ttattgcctcaggaagaagcacagtctgttggtcagctaagggaggtttcaaacaaagcg
cataatgctgagctgaagcttttcttagaagtagaacttggaccggatcttagccctctc
tctccaccattaaaaactaaggaagatatactacttttcttcaagctctatgaccctgaa
aaagaagctctgagatttgcaggaaggctatttgtgaaggctttggggaaaccaaccgaa
attctcccaaaattgattgaaatggctgaatttcctgcgaatgaagaaattgaactttat
gaggaaataaagtttgaaccaaatgttatgtgcgaacacattgataagaggatttccttc
aaatcaagccagcttgaagatggagatatcatttgctatcaaaaaactttgacatctgca
aatagagatcagtttcggtatcctgatgttccctcattcttggaatatgttcgaaaccgc
caggttgttcattttcgatccttggagaagccaaaggaggatgatttttcattggaacta
tccaagctctttacctatgatgatgttgttgaaagagttgcatgccaccttggtctagat
gatcccacaaaaattcgtctcacctctcataactgctattctcagcagcctaaaccacaa
ccaatcaagtaccgtggtgtggatcacctttctgatatgctagctcattacaaccagttg
ccacagacatctgatatactatattatgagatattggatattcctctgcctgaattacaa
ggtttaaaaacgctaaaagtagcattccaccatgctacaaaggaggaggtggcaattcac
agcatccgacttccaaagaatagtactgtggctgatgtaattaatgacctaaagaataag
gttgagctctctcgtcctgatgctgaactcaggttgcttgaggttttctatcacaaaatc
tataagatctttccacttggtgagaagattgagaacatcaatgatcagtactggacttta
cgtgccgaggagattccagaagaagagaaaaaccttggtcctcatgatcgcttgattcat
gtctaccattttactagagatccaaatcagaaccaaatgcaagttcagaattttggagaa
cctttcttcttagttattaaggaaggtgaggctttagccgatgtcaagttacgcattcag
aagaaactgcaagttccagatgaagaatttgcaaagtggaaaattgcttttatatcactt
ggtcgccccgaatacctccaagattcagatgtagtgtcgaataggtttcagaggagagat
atttatggagcctgggagcagtatcttggtttagagcattcagacactgctccaaaaaga
gcttatacaactaatcagaaccgtcacacatttgagaagccagtgaaaatttataattga
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