Zingiber officinale (ginger): 122038016
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Entry
122038016 CDS
T08725
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122038016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122038016
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122038016
Spliceosome [BR:
zof03041
]
Complex C
Other components
Step II factors
122038016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_1st
KH_DEAH11_2nd
KH_DEAH11
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
zf-RING_UBOX
zf-C3HC4_2
AAA_22
IBR_1
zf-RING_5
zf-RING_2
zf-C3HC4
AAA_19
KH_PARP14_8
zf-C3HC4_4
HA2_N
zf-Nse
AAA_16
ResIII
Helicase_RecD
ABC_tran
nSTAND3
AAA_30
AAA_29
RsgA_GTPase
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
122038016
NCBI-ProteinID:
XP_042453488
LinkDB
All DBs
Position
1A:complement(152639245..152650671)
Genome browser
AA seq
1728 aa
AA seq
DB search
MSRADFLGHRMEGPPPWPVRRPPYKPNRPRPPFAVVLYYSTPGVRKAMSFSDIEELISSI
PSRSAFYRICSSGLVAGRLFYDIYADALDATLFLWSQRLDGAHLLTPLIEVDFNAPSYDK
SEEEVLLKALFCSHIRELLCHRRVRFSEQKIEELSMKLDNGPVLRKKPTKPRVFNELREE
KNRLLSERKQLRDQLREFRAAMGCLLAKLGEQLDHIHPDLHEETNCRDGQEEIFCLGDKL
DWNQIHGLMMRECRRLEDGLPIYGCRREILSHIFSNQVVVLIGETGSGKSTQLAQFLADS
GFAAQKAVVCTQPRKIAVNSLAQRVGEEANGCYPNNFVLSYPSYVPCQEFKSGIIFMTDH
CLLQHFMNDTSWDGISCIIIDEAHERNLNTDLLLALIKKELLKRPQLQLIIMSATADATK
FSDYFCGCSTYYLMGRNFPVAIKYVADVSASPYGSTNIKAPSGKCASYVLDVLKMVSYIH
KTEEDGAILAFLTSQIEVEWACETFTDPTALVMPMHGKLSVEEQRKVFQDYPGKRKVIFC
TNIAETSLTIKGVKYVVDSGMVKESRFEPSTGTNVLKVSTVSQSSANQRAGRAGRTESGK
CYRLYSESDFHSMKMHQEPEIRKVHLGIAVLRILALGIKNVDDFEFVDAPCPRAVEIAIQ
NLIHLGAITRKGEVFDITEMGQYLVKLGIEPRLGKIILDCFDCGLRKEGVVLAAVMANAS
SIFCRVGTEEDKHKADCLRVRFCHHDGDLFTLLSVYRTWEAERESSNWCWKNSINAKSMR
RCKEAISELESCLRHELHIIIPSYWLWNPDKPNAYDKLLKKVILSSLSENVAMFSGRDQL
GYEVAITGQCIELHPSSSLLAYGRKPDWVVFGEILSLSNDYLVCVTAVDLGDLLMIQPPL
FDVYQLESRRMQMNVITGVSNNILRRFCGRLNQNLQRVVSHLQNVCSDNRISVDVDFVKN
EVYIYASKKDMEEVSVFVKDAMGYETRLIKNECIEKCLFPGRSDSSSLALFGSGAEIKHL
ELESRFLSVEILHPNSLALDDKELLMMVENSGCRIANYHKYVGTGQDGVDGTKWGRITFL
SPDMAEYAINKLNMLEFGGSFLKALSIRTADQKIIPFSAVRVKVCWPRKPSRGIALVTCA
PGEAEYVIEDCFSLAIGGRYIDLQVSEKYQNCVFVRGIPKDVSEAELYDAFLSLTKRKIF
NIRLCREEVITDLPTSTFEEALIKEISPFMPKKHFSDNSFRVEIFRPAPQDPITRAMITF
DGSLHLEAAKALEHIEGKVLPGCLSWQKIQCEHVFRSSLCFPSHIYAVIRKNLDSLLESF
RCRKGVSYNLEKNDNGSYRIKISANATKTIADLRRPLEQLIRGKIISHPSLNPAVLQVVW
SRDGMACIKSLEREMGIHILCDRRSLNIRVFGPPRQVSAAEHKLVSMLLDLHGNQQLEIH
LHGRKLPPNLMKEVVHRFGTDLQGLKDNMPEVVLTLNTRRHILSVRGTKDQKQRVQDSIT
ELALAIDQNGVSERSLESSCPICLCELEDPYKLEACGHTFCRSCLLDQCETTMRSRDGFP
LCCIKQGCKELILLIDLKSLLSSEKLEELFKASLSAFVISSDGAYRFCPTPDCPGVYRVA
LPDDEVGPFVCGACTAETCRKCNLEYHPFISCDVYMEYKEDPDFSLAEWVKEKENVSNCP
GCGWTIEKTDGCNHVECRCGRHICWVCLDYFKSSDHCYSHLRSIHQTY
NT seq
5187 nt
NT seq
+upstream
nt +downstream
nt
atgagccgggccgatttccttggtcatcgaatggagggccctccgccgtggccggtacgt
cggccgccgtacaaaccgaataggcctcgcccacccttcgctgtcgttctctattactcg
actcccggtgtacgcaaggccatgtctttctccgacatcgaagagctcatctcctccatt
ccctcccgctcagccttttaccgcatctgctcctcaggccttgtcgccgggcgtctcttc
tacgacatctacgccgacgcccttgacgccactctcttcttatggagccaacgcctcgat
ggcgcccacctcctcacccctctcattgaagtcgatttcaacgctccgtcctatgataaa
tccgaagaggaggttctattgaaggctctattttgcagtcacattagagaacttctttgt
catagaagggtgcgattttctgagcagaagatcgaggagctctcaatgaagttggataat
ggtccagtgctgcggaaaaagcctactaagcctcgggtgtttaatgaactgagggaggag
aagaataggctcctgagcgagagaaagcagctgagggatcagctacgggagttccgggct
gccatgggctgtcttcttgctaaacttggggagcaactagaccacattcaccctgatttg
catgaagagactaactgtcgggatggacaagaggaaattttttgtcttggagataagtta
gattggaaccaaattcatggactgatgatgagggagtgccgacggttagaggatgggtta
cctatctatggatgcagaagggaaattctttcccatattttttccaatcaggtcgtagtc
ttgattggagagaccggctcaggaaagagtactcaattggcacagtttcttgctgattca
ggatttgctgctcagaaagctgttgtgtgcacgcagcctcgcaaaattgctgtaaactca
ttggcacaaagggttggagaggaagccaatgggtgttatcctaacaattttgtgctttct
tatcccagttatgtaccctgtcaagaatttaaatcaggcataatatttatgacagaccac
tgtctccttcagcactttatgaatgatacaagttgggatggcatttcatgcattattata
gatgaagctcatgaaagaaatttgaacactgatcttcttctggcattgattaaaaaggag
ctgcttaagaggccacaattgcagcttataataatgtctgcaacagctgatgcaaccaaa
ttctcagattatttttgtggttgcagcacctattatctcatgggaagaaattttcctgtg
gcaatcaaatatgtagctgatgtatctgctagcccttatggttctactaatataaaggcc
ccttctggaaaatgtgcttcatatgtcttggatgtcttaaaaatggtaagttatattcac
aagacagaagaagatggtgctatcctagcatttttgacttctcagattgaagtagaatgg
gcttgtgaaacctttactgatcctactgctttggtaatgcctatgcatggaaaactttct
gttgaagagcaaagaaaagtttttcaggattatcccggcaagagaaaagttattttctgc
acgaatattgctgagacatctcttactattaaaggtgttaagtacgttgttgattctgga
atggttaaagagagcaggtttgaacctagcactgggactaatgtgcttaaggtcagtaca
gtcagccaaagttctgctaatcaacgagctggccgagcaggtcgaacagaatctggcaag
tgttacagactctattcagagtctgattttcattcaatgaaaatgcatcaggaacctgaa
atccggaaagtccaccttggtattgctgttttgcgaatccttgctttgggtattaagaat
gttgatgactttgagtttgttgatgctccgtgccctagggcagttgaaatagcaattcag
aacctaatacatttaggtgctatcacacgaaaaggtgaggtctttgacattacagagatg
ggccaatatttggtgaaattaggcattgaaccacgactgggaaaaataattcttgattgc
tttgactgtggtttgaggaaagagggtgttgtccttgctgctgtaatggctaatgctagc
agcatattttgtagggttggaactgaagaggacaagcataaagctgattgtcttagggtt
cggttctgccatcatgatggagacctgttcactcttctctcagtttatagaacatgggag
gctgaacgagaaagtagcaactggtgttggaaaaatagcatcaatgcaaagtcaatgagg
agatgtaaggaagctatatcagaattggaaagttgtctccgacatgaactccatattatc
attcctagttattggctgtggaatcctgataaacctaatgcctatgataaattgctgaag
aaagtcattctttcttccctttcagagaatgttgcaatgttctctgggcgtgatcaactt
ggttatgaagtggctattactggtcagtgcattgaacttcatccatcaagctctttgcta
gcatatgggagaaagcccgattgggtggtatttggggagatattgtcattatctaatgat
tacttagtttgtgtaactgctgtggaccttggtgatctactcatgattcagcctcctctt
tttgatgtgtaccagcttgaaagtcgtaggatgcagatgaatgtgattactggagttagc
aataacattcttcgaagattttgtggaaggctaaaccaaaacttacagagggtggtttca
catcttcaaaatgtttgttcagacaaccgtatcagcgtcgatgttgattttgttaaaaat
gaggtttatatatatgcctcaaaaaaagatatggaggaggtgtctgtttttgttaaggat
gccatggggtatgaaacaagactcataaaaaatgagtgcattgagaaatgtttatttcca
ggccggtcagatagttcttctttggctctctttggctctggtgctgaaattaagcatcta
gagcttgaaagccgatttttatcagtggaaatactacatccaaattcacttgctctagat
gataaggaacttctaatgatggttgagaatagtggctgtagaatagctaactaccataag
tatgtgggaactggacaagatggagtagatggaactaagtggggaaggataacattcctt
tctcctgacatggctgaatatgcaattaacaagctaaatatgctagagtttggtgggtct
ttcctaaaagccctgtcgattaggacagctgatcagaagatcatacctttttccgcagtt
agagtaaaggtttgttggccaaggaagcccagtaggggaattgcacttgttacatgtgca
cccggagaagcagaatatgttattgaggactgcttttctttagcaattggaggcagatac
attgatcttcaggtcagtgaaaaataccaaaactgtgtgtttgttagaggaattcccaaa
gatgtatcagaagctgaactttatgatgcttttctaagtctgacaaagaggaaaatcttc
aacattcgcctttgtagagaagaagtaattactgacctgccaacttccacctttgaagaa
gcacttatcaaggagatttctccttttatgcctaaaaagcatttctctgacaatagtttc
cgtgtcgaaatcttcagacctgcaccccaggatccaatcacaagagctatgattacattt
gatggaagtctgcatcttgaggctgctaaagctttggaacacatcgaagggaaagtgctg
cccggttgtctctcgtggcagaagattcaatgtgaacatgtatttcgtagttctttgtgt
ttcccttcacatatttatgctgttatccggaaaaatctggattcactactggaaagtttc
aggtgtcgcaaaggtgtatcgtataacctagagaagaatgataatggttcttatcgtata
aagatatctgcgaatgccacaaaaaccattgcagatttgaggagacctctggagcagctg
ataagaggcaaaataatttcacacccaagcctcaacccggcagtcctacaagttgtctgg
tctcgtgatggcatggcatgcataaaatctctcgagcgggaaatgggaattcatattttg
tgtgaccggcgtagcttaaacatcagagtttttggtccaccaaggcaagtatctgctgcc
gagcataagttggttagtatgttacttgatctccatgggaaccagcaacttgagattcat
cttcatgggcgtaagctcccaccaaacttgatgaaagaggtggttcacaggtttggaact
gatctgcaagggctgaaggacaatatgcctgaggttgtgttaactctcaatacccgacgc
catatcctctctgtacgtggaaccaaggaccaaaagcagagggttcaggactcgatcact
gagttggcattagctattgatcaaaatggggtaagtgagaggtcattggaatcttcatgc
cccatatgcttgtgtgagctggaggatccttacaaacttgaagcttgtggtcacactttc
tgtcgatcttgtttgttggatcaatgcgaaactaccatgagatcacgtgatggtttcccg
ctttgctgcatcaaacaggggtgcaaggagctaatcctgctgatagacctcaaatcttta
ttatcatcagagaagctggaggagctattcaaagcatctttgagtgcgtttgtgatatcc
agtgatggtgcttatcgcttctgtccgacgcctgactgccctggagtgtatcgtgttgcc
cttccggatgatgaggttgggcctttcgtctgtggggcttgcactgctgagacatgcagg
aagtgcaatctcgagtaccatcctttcatttcctgtgacgtatacatggaatacaaggag
gacccagacttctcgctggctgaatgggtcaaggaaaaagaaaatgtaagcaactgcccg
ggctgtgggtggacaattgagaagactgatggctgcaaccacgttgagtgtaggtgtgga
aggcacatttgctgggtgtgcttggattacttcaaaagcagtgatcattgctattcacac
ctcagatctattcatcaaacctactga
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integrated database retrieval system
