Zingiber officinale (ginger): 122038330
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Entry
122038330 CDS
T08725
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
122038330
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
zof04040
]
122038330
Ion channels [BR:
zof04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
122038330
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Motif
Pfam:
Ion_trans
cNMP_binding
DUF6525
Motif
Other DBs
NCBI-GeneID:
122038330
NCBI-ProteinID:
XP_042453961
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Position
1A:complement(166759878..166836586)
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AA seq
829 aa
AA seq
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MTDLEDDHSSTLSGNIELPRFTARSASMSMSPSFAIDERTSEIGPVSGPLSRSNAVTLDD
SFYGGDVMSNKSLQMAGPPGLCNDPDQTESPAAYKTQKGNIELPRFTARSVSMSIPPSFA
IEDTFISHTGPLRIRKVPEISTVGGPLSRNTRHGVTRVQSRSNAGTPEVFDIDDSSYGGD
VMRHEHLLMSGPLGPCNNPDRTECPAAYKTKKAFLRSSISLDKKLHDILYGDNHSWAEKW
VSRLNSYFPIMNPHTRVVQQWNQFFVISCLVAIFIDPLFFFLLSVKEEEKCIVFNWSLAI
GIAVVRSVTDFIYLLHMILQFRLAYVAPESRVVDTGDLVDQPKKIALNYLRGYFFLDLFV
VLPLPQVMILAMIPDYVGPSAAIFAKNLLRVTVLLQYIPRIIRFVPLLGEQSATGFIFES
AWASFVNNLPIFVLVGHVVGSCWYLFGLQRVNQCLQDACTSQFLNCKTLIDCGRGDVDEG
QRQMWVNDSNSNSCFDIVDGTFRYGIYQQVVLLSTQPNVVQRYIYALFWGFQQISTLAGN
QVPSIFLWEVLFTMAIIGTGLFLFPLLIGNMQNVLQSLGRRRLEMQLRRRDVERWMSHRR
LPKALRRKVRQAERFTWAATRGINEEQLLENLPEDIQREIHRHFFGFLNKVRIFSLMDEP
MLDAIYKKLKQKVYIKGSDIFYKGGPVEKMVFIVSGKLESIGADGNIAPLAEGDVCGEEL
LTWYLEHTSVTREGGRIQFPGSRSLSTRTVTCLTNVEAFALHAADLEEVTTLFSQFLRNP
RGQGAIKDELPYWRKMPVTRCQVAWRYRQKRLKCASITNNLSANHTARR
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcttgaggatgatcattcctccacgctgtcaggaaatattgaattgccaaga
tttacggccaggagtgcatcaatgtctatgtcaccttcctttgccattgacgaaaggact
tctgagattggtcctgtcagtggccctttgagtagatcaaatgctgttacacttgatgat
tccttttatggtggtgatgtcatgagcaataaatctttgcagatggccgggcctcccgga
ctgtgcaatgatcctgatcagactgagtcccctgcagcttataaaacccaaaagggaaac
attgaattgccaagatttacggccaggagcgtatcaatgtctatcccaccctcctttgcc
attgaggatacctttatatctcatactggtcctctgcgtatccggaaggttcctgagatt
agtactgtaggtggccctttgagcaggaatacgaggcatggagttaccagagtgcaaagt
agatcaaatgctggtacacctgaagtatttgacattgatgattcctcttatggtggtgat
gtcatgagacatgaacatttgctgatgtctgggcctttgggaccgtgcaacaatcctgat
cgcactgagtgccctgcagcttataaaaccaaaaaggcgtttctaagaagttctatatct
ctggataaaaagcttcatgacattctatatggggataatcatagctgggctgaaaaatgg
gtttcgcggctgaattcatatttcccgattatgaatcctcatactagagttgttcaacag
tggaaccagttctttgtaatatcttgcttggttgcaatcttcatcgacccactgtttttt
ttcttgttatctgtaaaggaggaagaaaaatgtatagttttcaactggtctttggcaatt
ggaattgctgttgtacggagtgtgactgatttcatttacttgttacacatgattcttcag
tttaggcttgcatatgttgctcctgaatctagagtggtcgatactggggatctagttgat
caacctaagaaaattgctcttaattatcttcgtggatactttttcttggacttgtttgtt
gtattgccacttcctcaggtaatgatattggcaatgataccagattatgtggggccatca
gcagcaatttttgccaaaaatcttttacgtgtaactgttctcctccaatatatccctcgg
ataatcagatttgttccattgcttggtgagcaatctgcaactggtttcatatttgagtcc
gcatgggcaagctttgtcaataatcttcctatttttgtattggttggacatgtggttggt
tcatgttggtacctctttggtttacagagagtaaatcagtgtctgcaggatgcctgtact
tcacagtttctaaattgtaaaactttgatagattgtggtcgtggtgatgttgatgaagga
caaagacaaatgtgggttaatgattccaattctaattcttgctttgacattgttgatgga
acctttagatatgggatttaccaacaagttgttttgctaagcactcagcctaacgttgta
caaagatatatttatgctctattttggggttttcagcaaataagtaccttagcaggtaat
caagttccaagtatttttttgtgggaagttttgttcactatggcgatcattggaacgggg
ttgtttctttttcccttgcttattgggaatatgcaaaatgttctccagtctcttggtaga
aggagactagaaatgcaacttcgacgacgtgatgttgaacgatggatgagccatcggcga
ttacctaaagcattaagaaggaaagtaagacaagctgaacgatttacatgggcagctacg
cggggcattaatgaagaacagttactagaaaatctgccagaagacatacaaagagagata
catcgtcatttctttgggtttctcaataaagttcgcattttctccctaatggacgaacca
atgttagatgccatatacaagaagttaaagcaaaaggtgtacattaaaggaagtgacatc
ttttataagggagggccagttgaaaagatggttttcatagtctctggaaaattggaaagt
attggagcagatggaaacatagcccccttagcagagggtgatgtatgtggcgaggagctc
cttacgtggtatcttgagcacacttcagtaactagagagggtgggagaatccaattccca
ggatcgcggtcgttatcaactcgaactgttacatgtctaaccaatgttgaagcttttgca
ctccatgctgccgatctagaagaagtcactacattgttctcccagttcttgagaaaccca
cgcggacaaggagctattaaggatgaattaccctattggagaaaaatgcctgtgacacgc
tgtcaagtggcttggagataccggcagaagcgtttgaagtgcgctagcatcacaaacaat
ttatctgctaatcacacagctcgacgctga
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