Zingiber officinale (ginger): 122038371
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Entry
122038371 CDS
T08725
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease 2-like
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122038371
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
122038371
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
122038371
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GFIT
Motif
Pfam:
Exo_endo_phos
Zn_ribbon_GRF
Motif
Other DBs
NCBI-GeneID:
122038371
NCBI-ProteinID:
XP_042454025
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Position
1A:complement(168955577..168979494)
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AA seq
631 aa
AA seq
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MKIVTYNVNGLRQRVAQHGSLLRLLTSLDADIICFQETKLSRRELSVDLTMAEGYEAFVS
CTRTSKRGRLGYSGVATFCRVRSAFSSKEVALPVEAEEGFTGLLECSKKRDIPTDLLLEA
PIEEQKLEITQEDLLKVDNEGRCIITDHGHFVLFNIYGPRAEHDDEERCRFKFIFFKILQ
RRWDFLLNEGKRIFVVGDLNIAPTAIDRCDAGPEFEKNLFRKWLRSLLREYGGQFFDAFR
SKNPGRKEAYTCFSPRIGAEEFNYGSRIDHILIAGSCLHQKHDIEGHNFLSCHVEACDIM
SQFRRGNCRNVPRWRGGRNIKLEGSDHVPVHVILRDIPDLPLHNTPSLAVRYIPEVRGWQ
QSIVSFLVKGQVTRHCLPSDSSNDNNTRAGHEECVIRSEGCSLTTEQEFIATSQDSPDPS
ISKLKLIQKPYTSLNNDSGLTASQKSIMSSEVEKREYVSGSTTSMKKRTRHSTCSQLTLK
SFFKQPKTVGTCDDDSLRGDATSQNFYSEKDAEEVSQMMEQEVNQDLQNNCEMSATSVNT
YDDDSEISFPCERESNSSAVIEWQKIQQKMKMTLPICKGHGEPCVARSVKREGPNRGRLF
YVCARAQGPASNPEANCGYFQWGSSKSKKAK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagtgacgtacaacgtaaacgggctcaggcagcgtgttgctcagcacggctcc
ctccttcgccttctcacctcgctcgatgccgacatcatctgcttccaggaaacgaagtta
tcaagacgtgagttatctgtagatctaaccatggcagaggggtatgaagcttttgtttct
tgcactcgtacttctaaaagaggacgtttgggctattctggtgttgctacattttgccgg
gtgagatcagcattttccagtaaggaggtagcattaccagtggaagcagaagaagggttt
accggtcttcttgaatgttcaaagaagagggatatacccacagatttattgcttgaagca
ccaattgaggaacaaaaacttgagatcacacaggaggatttgttaaaagtggataatgag
ggtcgttgtataatcactgatcatggacattttgtactttttaatatatatggcccacga
gctgaacatgatgatgaggaaagatgccgctttaaatttattttcttcaagatcttacag
agaagatgggattttctccttaatgagggaaagagaatatttgttgttggagatcttaat
attgctcccactgcgatagatagatgtgatgcaggtccagagtttgaaaagaacttgttt
cggaaatggctacggtctttgctgcgagagtatggaggccaattttttgatgcttttagg
tcaaaaaatcccggaagaaaagaagcatacacttgcttctcaccacgtattggagccgag
gaattcaactatggctctaggattgaccatattcttattgctgggtcgtgtttgcatcag
aagcatgatattgaaggacataacttcttaagctgccatgttgaagcctgtgatattatg
agtcagtttagaagaggaaattgtaggaatgttccaaggtggagaggagggagaaacatt
aaattagaaggttcagatcatgttcctgttcatgttatattgagagatatacctgatctt
ccattacacaacactccatctttggccgtcagatatattcctgaagtccgtggttggcaa
caatctatagtttccttcttggtgaaagggcaagtaacacgtcattgcttgccaagcgac
tcgtcgaatgacaacaatacaagagcaggtcacgaagaatgtgtaataagaagtgaaggc
tgtagcttaaccactgagcaggaattcattgccacatctcaggactctccagatcctagc
atttccaaattgaaactaatacaaaaaccctatacaagtctaaacaacgattctggtctt
actgcttctcagaagagtattatgtcatcagaagttgaaaagagagagtacgtgtctggt
tccaccacaagcatgaagaaaaggacaagacatagtacatgttctcagcttactttgaaa
tctttttttaaacaacccaagactgttggaacatgtgatgatgattctttgaggggtgat
gcaacatctcaaaatttttattcagagaaagatgcggaggaggtatctcagatgatggaa
caggaagttaatcaagatctacagaacaattgtgaaatgagtgcgacgagtgtaaacaca
tatgatgatgattcagagatatcctttccttgtgagagggagagcaacagttctgcagta
atagagtggcagaaaattcagcagaagatgaagatgactttgccaatctgcaaaggacat
ggtgaaccttgtgtagcaagatcggtgaaaagggaaggccccaatagaggtcgtctcttc
tatgtttgtgctcgtgcccagggacctgcttctaatccagaagcaaactgtggttacttc
caatggggttcttcaaaatctaagaaggccaagtaa
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