Zingiber officinale (ginger): 122038434
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Entry
122038434 CDS
T08725
Name
(RefSeq) H/ACA ribonucleoprotein complex subunit 4-like
KO
K11131
H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122038434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122038434
03032 DNA replication proteins [BR:
zof03032
]
122038434
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
122038434
Prokaryotic type
122038434
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
Dyskerin complex
122038434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DKCLD
TruB_C_2
PUA
TruB_N
UPF0113
Motif
Other DBs
NCBI-GeneID:
122038434
NCBI-ProteinID:
XP_042454118
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All DBs
Position
1A:173002129..173004388
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AA seq
617 aa
AA seq
DB search
MSLQGSQIPSSSPPTTEKKRKTKKSSDNATPSANDGHLYLAPSAVVSSEGDQVKDFFIKP
QSFTPSVDTSAWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPLAEYLRYGILNLDKPSNP
SSHEVVAWIKRLVRAEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLH
SAVPDVAKVARALETLTGAVFQRPPLISAVKRELRIRTIYESKLLEYDPDRHLVVFWISC
QAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVLDAQWMYDNFKDES
YLRRVVMPLEVLLTSYKRVVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVLMTTKG
EAVALGVAEMTTSVMATCDHGSVAKIKRVVMDRDTYPRKWGLGPRALMKKKMVAEGLLDK
HGKPNEKTPAEWLRNVVLPTGGDSMVAGLAAAPEPMVKMEMVIEEVTEEKKKKRKHKDKD
DDITDGWKDKVEDAGEPPASKKVKVEEVAEDAVLDSEAKTMKKNVEEASKQKSENKKKKS
EKEMGEVELADAEKSSKKKEKKEKRNKSKSEAGYSDEEKLTEKKKKNKEDMGGEEAALAG
NIEKSEEKKKKKKKHDS
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcaaggatcccagatcccctcgtcttctccaccaaccaccgagaagaagagg
aagactaaaaagagctcggacaacgccacgccctctgccaacgacggccatctctatctc
gccccttccgccgtcgtctccagcgaaggcgaccaagtcaaggacttcttcatcaagcct
cagtccttcactccctccgtcgacacctcggcctggccgatcctcctcaagaactacgat
cgcctcaacgttcgcaccggccactacacgccactccccgccggccactcccccctcaaa
cggcccctcgcagagtatctccgctatggcatcctcaacctagacaagccctctaacccg
tcctcccacgaggttgtcgcgtggataaagcgcctagttcgcgccgagaagaccggccac
agcggtaccctcgaccccaaggtcaccggcaacctcattgtatgtatagatcgcgccact
cgtctcgtcaaatcccagcaaggtgctggaaaggagtacgtctgcgtggcccgactccac
tctgccgtccctgatgttgccaaggtcgctcgtgcccttgagaccctcactggcgccgtc
tttcagcgtcctcctcttatttcggccgtcaagcgtgagcttcgcatcagaaccatatac
gagagcaagctgcttgagtatgaccctgaccggcacttggtcgtcttctggatctcatgc
caggctggaacgtatgtccgtactctctgcgtccatcttgggctgatccttggtgttgga
gggcacatgcaggagttgcggcgcgtccgctctggcatcctcggtgagaaggataacatg
gtgaccatgcacgatgtgttggacgcgcagtggatgtatgacaacttcaaggatgagagc
tacttgaggcgggttgtgatgccactggaggttctgcttactagctacaagagggtggtt
gtcaaggattctgctgtaaatgcgatttgctatggtgccaaactgatgattcctggtctt
cttagattcgagaacgatattgaggttggagaggaagtggtactgatgaccactaaaggt
gaagcggttgctcttggagttgctgagatgacaacttctgttatggcaacatgtgaccat
ggatcagtggccaaaataaaacgagtggtaatggaccgggatacttacccccgcaaatgg
gggttgggcccaagagctctgatgaagaagaaaatggttgctgaggggctgttggataag
cacggaaagccgaatgagaagacaccagctgagtggctaagaaatgtggtgctgccaact
ggtggagattcaatggtcgctggcctcgctgctgcacctgagcctatggtgaagatggaa
atggtgattgaagaagttacagaggagaagaaaaagaaaaggaaacacaaggataaggat
gatgatatcactgatggatggaaggacaaggtggaggatgctggagaaccaccagcttct
aagaaggtgaaggtcgaagaagtcgctgaggatgctgttttggattctgaagcaaagacg
atgaagaaaaatgttgaggaagcatcgaagcagaagagtgaaaataagaaaaagaagtcc
gaaaaagagatgggagaagtagaattagctgatgctgagaagagttccaagaagaaagaa
aagaaggaaaagagaaataaaagtaaaagtgaagctggttattctgatgaagagaaattg
actgagaagaaaaagaagaataaagaggacatgggtggtgaagaagctgcattggcaggc
aacatagagaaaagtgaggagaagaagaagaagaaaaagaagcacgattcatga
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