Zingiber officinale (ginger): 122038560
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Entry
122038560 CDS
T08725
Name
(RefSeq) homeobox-leucine zipper protein ROC8-like
KO
K09338
homeobox-leucine zipper protein
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122038560
Transcription factors [BR:
zof03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain other
122038560
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDF2_C
START
Homeodomain
Homeobox_KN
YacG
Motif
Other DBs
NCBI-GeneID:
122038560
NCBI-ProteinID:
XP_042454293
LinkDB
All DBs
Position
1A:181670201..181674583
Genome browser
AA seq
692 aa
AA seq
DB search
MDSGDEQDVPDSQGRKKRYHRHTPRQIQDLEAMFKVCPHPDEKQRMQLSRDLGLEPRQIK
FWFQNRRTQMKAQQERTDNCLLRAENDKIRCENIAMREALKHVICPSCGGPPSNEDSYFD
EQKLRMENARLKEELDHVSSMASKYLGRPITQLPPVQPLSISSLDLSVGGYSNPGLSPSL
DLDLLCRSSSSAFPYAPTATSELEKPLMVEMATNAMEEFIRLVQTDEPLWVKSGSDGRDM
LQLETYERMFQRPGQQLKLLDTRIEASRDSALVIMSALALVDMFMDASKWQELFPTIVSK
ARPIEVLASGMAGSSSGSLILMYAEMQVLSPVVPTREFCFLRYCQQIDQGMWAVADVSVD
FPRDNHLASQSRRLPSGCLIEEVPNGYSKVTWVDHVEIEEKNPVHVLFNDLISSGMAFGA
QRWLTTLQRMCERFACFSVAGVPTRDAGVAPSPDGKRSMMKLAQRMVSNFCANVGASIGH
KWTTLSGPSDIGVRVTLHKSTDVGQPNGVVLSAATSIWLPISPESVFSFFKNERTRTQWD
VLSNGNTVQEVAHITNGSHPGNCISLLRGLNSGQNAMLILQECFTDASGSAVVYSPIDLP
AINIVMSGEDPSYIPILPSGFTILPDGRSTGGQGASSSSNPMGGSSGSLVTVAFQILMSS
LPSAKLNLESVMTVNNLISTTVQQIKSALNCP
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggactccggcgatgagcaagatgttcccgactcacaggggaggaagaagcggtatcac
cggcatactccgcgccagattcaggatctcgaagcgatgtttaaggtgtgcccgcacccc
gacgagaagcagaggatgcaactgagccgggatctggggctggagccgcggcagatcaag
ttctggttccagaatcgccggacgcagatgaaggcccaacaagagcggacggacaactgc
ctcctccgcgccgagaacgacaagatccggtgcgagaacatcgccatgagggaggcgctc
aaacacgtcatctgcccctcctgcggcggcccgccgtcgaatgaggactcctacttcgac
gagcagaagctgcgcatggagaatgcgaggttgaaggaagagctcgatcatgtctcaagt
atggcatcaaaatacctcggaaggccaatcacccagcttcccccagttcagccactatcc
atatcttcacttgacttatcggtcgggggatatagcaatccaggattaagcccctctctt
gatcttgaccttctctgtcggagttcttcttcggcctttccatatgctccaacagcaact
tccgagcttgaaaagcctctaatggtggagatggccaccaatgcaatggaggaattcatc
aggttagtgcagactgatgaacccctctgggtgaagtcgggcagcgatggaagggacatg
cttcaacttgaaacttatgaaaggatgttccagaggcctggccaacaactcaagttactg
gatactcgaattgaggcatcgagggattcagctttggtcattatgagtgctttggcattg
gttgacatgttcatggatgcaagtaagtggcaagagttgtttcccacaatagtttccaag
gcaaggcctattgaggtgctggcttcaggaatggcaggaagttcaagtggatcgttgata
ttgatgtatgcggagatgcaagttctttcaccagtggttccaactcgtgagttctgcttt
cttcgctattgccagcaaattgaccaaggaatgtgggcagtagctgatgtttcggtggac
tttcctcgagataatcatcttgcttcgcagtcaaggaggcttccttctggttgcttgatc
gaggaggtgcctaatggctattctaaggtcacttgggttgatcatgtggagattgaagaa
aaaaatccagttcatgttctcttcaatgacctaataagtagtggtatggcgtttggggcg
cagcggtggctcaccactcttcagcgaatgtgtgaaagatttgcttgtttctctgttgct
ggagttccaactagagatgccggagttgctccgtcacccgacggtaagaggagtatgatg
aagcttgctcaacgaatggtgagcaacttctgtgccaatgttggtgcatcaattggtcat
aaatggacgactctctcgggacctagtgacataggagttagggttacacttcacaaaagt
actgatgttggccagcctaatggtgtcgttctcagtgctgcaacttctatttggcttcct
atatcacctgaaagtgtcttcagcttcttcaagaacgaacgaactcgaacacagtgggat
gttctctcgaatggcaacactgtacaagaggtggcacatatcacaaatggatcccatcca
gggaactgcatttcccttcttcgtggtctcaactcagggcagaacgccatgttgatactc
caagagtgcttcactgatgcatcgggctcggcggtggtttactctcctatcgatctacca
gcgatcaacattgtcatgagcggggaggatccctcctacatacccatcctgccttcaggc
ttcaccattcttccagacggacgatcgacagggggacagggggcatcatctagctcaaat
cctatgggtgggtcatcaggctcgctggtcaccgtggctttccaaattcttatgagcagc
ttgccttccgcaaaacttaacctggagtcagtaatgacagtcaataacttgataagcacc
accgtccagcaaataaagtctgccttgaactgtccttaa
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