Zingiber officinale (ginger): 122038870
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Entry
122038870 CDS
T08725
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122038870
09123 Folding, sorting and degradation
03018 RNA degradation
122038870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122038870
03041 Spliceosome [BR:
zof03041
]
122038870
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122038870
mRNA cycle factors
Stress granule specific factors
122038870
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
122038870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RBD_DEAH11
Nup35_RRM_2
RRM_3
xRRM
BRAP2
DUF1054
Motif
Other DBs
NCBI-GeneID:
122038870
NCBI-ProteinID:
XP_042454766
LinkDB
All DBs
Position
1A:191071474..191079915
Genome browser
AA seq
647 aa
AA seq
DB search
MAQEPIEQQAANGVVSAAGGNQPPLASLYVGDLHPTVTEPQLFEFFSQIGPVVSVRLCQD
VETNRSLGYAYINYSNPADAAMALDALNFTPLNNKPIRIMYSNRDPSIRKSGSANIFIKN
LDKTIGNKGLHEIFCSFGNILSCKIATDAFGQSKGYGFVQFDQEEAAQNAINRLNGMLVN
DKPVYVGPFIRKQERENSAEKTKFCNVFVKNLSESTTKEDLENIFGKYGKITSAVVMTEE
DGKSKCFGFINFENPDDAAQAVQELNGQKFDDKEWYVGKALKKSERELELREKFVQSARE
TFDKYQGLNLYLKNLDDSIGDDKLRELFSGFGTITSCKVMREPNGVSKGSGFVAFSTPNE
AARALAEMNGKMVGGKPLYVALAQRKEERKARLQAQFSQVRPAAIMPNVGPRVPIYSSAP
GMGQQIFYGQPPPALVPPQPGFGFQQQLIPGMRPGGAPIPNFVVPLVQQGQQGHRPSGRR
SGGAVQQMQQPMTLIQQQQMLPRGRIQRYPPGRNIPDGPMPGVIGGMISPYDMGGFGMRD
VPIPQPIPIGALASALANATPEQQRMMLGENLYPLVEQHEHDHAAKVTGMLLEMDQTEVL
HLLESPDALKEKVGEAMEVLRNVQQQQVVTAPTDQLSALSLSDGLVP
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggaaccgatcgagcagcaggcggcgaacggggtggtcagcgccgcaggaggg
aaccagccccctttagcgtcgctctacgtgggggacttgcatccgactgtgacggagccg
caactgttcgaatttttcagccagatcggaccggtggtgtcggtgcgcctctgccaggac
gtggagacgaatcggtctctgggctatgcctatattaactacagcaaccccgcggatgct
gcaatggctttggatgcactgaacttcactcctcttaataataagcccattcgtattatg
tattcaaatcgtgaccctagcattcgtaaaagtgggtctgcaaatatttttatcaagaat
ctagataaaacaataggcaataaaggactacatgagatcttctgttcttttggcaatatt
ttatcctgcaagatagctacagatgcatttggccagtcaaaaggctatggttttgtacaa
tttgatcaagaagaagctgcacaaaatgccatcaacaggctaaatggcatgcttgtgaat
gataaaccagtttatgttggacctttcattcgcaagcaagaacgggaaaactctgcagag
aagacaaaattttgtaatgtctttgtcaaaaacctttcagaatccactacaaaggaggac
ctagaaaatatttttggaaaatatggtaaaatcactagtgcagttgttatgaccgaggag
gatggaaaatcaaagtgctttggattcatcaattttgagaatccagatgatgctgcccaa
gcagttcaagaactcaatgggcagaaatttgatgacaaggagtggtacgtaggaaaggct
ctgaaaaaatctgaaagggaattagaattgagggaaaagtttgtccaaagtgccagggag
acatttgataagtaccaagggcttaacctatatttgaagaacttagatgacagtattgga
gatgataagctgagagaattattttctgggtttgggacaataacttcttgtaaggttatg
cgggaaccaaatggtgtgagtaaaggctctggatttgttgctttctcaactcctaatgaa
gcagctcgagctttggcagagatgaatggaaaaatggttggtgggaagccactttatgta
gcacttgcacaacgtaaagaagaaaggaaagctaggttgcaggcacagttttcacaagta
cgtccagcagcaataatgcctaatgttggtccacgtgttcccatctattctagtgcccct
ggtatggggcaacaaatattttatggacaacctccccctgcccttgttccaccacagcca
ggttttgggtttcagcaacagcttattcctggaatgaggcctggtggggctcccatccca
aattttgttgttcccttggtccaacaaggtcagcaggggcatcgaccaagtggtagacgt
tctggaggcgctgtgcaacaaatgcagcagccaatgactttaattcagcaacagcagatg
cttccgaggggtcgtatccagcgctatcctcctggccgcaatattcctgatggtccaatg
cctggtgttattggaggtatgatctctccatatgacatgggaggttttggtatgcgagat
gttcccattccacaacccattccaattggggcattggcttcagcacttgctaatgcaact
ccagagcagcaaagaatgatgcttggtgagaatctctaccctcttgtggaacaacacgag
catgatcatgctgccaaagttacaggaatgctgttggagatggaccaaactgaagtgctt
catctgctggaatcgccagatgcgctgaaagaaaaagttggcgaggcaatggaagtcctg
agaaatgtccagcagcagcaggtggtgactgcgccgaccgatcagttatcagcgttgtcg
ttgagcgatggccttgttccttga
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