Zingiber officinale (ginger): 122038979
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Entry
122038979 CDS
T08725
Name
(RefSeq) protein SLOW WALKER 1-like
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122038979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122038979
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122038979
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40
WD40_CDC20-Fz
WD40_Prp19
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_TEP1_C
Utp13
Motif
Other DBs
NCBI-GeneID:
122038979
NCBI-ProteinID:
XP_042454905
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Position
1A:193313197..193316276
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AA seq
540 aa
AA seq
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MADESKPFFPVEKAHHVKPPPPRRPRLNTQESRFWRCFRHSELASGLILPVTALEFSPVA
PFHLAAACSAAVHLYDGGASPSLAPLPHSPLSGFSDVAYSPSFRCDGSLLAAGGESGIVQ
VFRLDKAGPPLRRLSAHARPVRFVRYPRLEDKLHVFSGGDDALLVYWDVPSETQLITFPG
AHRDYIRAGSPSPTSPEVMATGSYDHSIKIWDVRVPSSSNAILSFSHGDPVESVLFLPSG
GLLATAGGNVVKIWDVIGGGRLIHTMEGHNKTVSALSLGRVGNASTALGGGEPRLLSVSI
DGYMKSFDFAAFKITHSMRYPAQLLSIGFSPSGNSRVVGTSNGVIYMGMKKKLLQEEKGT
GSASVFDGYAPEPKKQVLKPTNYRYFHRGQTEKPRETDYPIKRAPKVKLAEHDKLLKKFR
HREALVSVLSKKDPTSTVAVMEELVIRKKLLKCVANLDVDELGLLLRFLHKYATMPRYAR
FLMNLANKVIEMRPEDIQSNKHLSKHVGSLRRRVAEEIMIQRSLQEIQGMISPFLIIAGR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgagtcgaagcccttctttccggtcgagaaagctcaccacgttaagcccccg
ccgccgcgccgtccccggctcaacacccaggagtcccgcttttggcgctgcttccgccac
tccgagctcgcttccggtctcatcctccccgtcaccgccctcgagttctccccagtggcc
cccttccatcttgccgcggcctgctctgccgccgtgcacctctacgacggcggtgcctct
ccttccctcgcccccctgccccattcgcctctctctggattctccgatgtcgcctactcc
ccatccttccgctgcgacggatcccttctggcagccggtggagagtccggcatcgtccag
gtcttccgccttgacaaggctggcccgcctcttcgacgcctcagcgcccacgctcgcccc
gttcgtttcgtccgctaccctcgcctagaggacaagctccacgtcttctccggcggagat
gatgctctccttgtctactgggacgttccctccgagacccagctaatcaccttccctggc
gcccaccgtgactacatccgcgctgggtcaccctccccgaccagccctgaggtcatggcc
actggctcttatgatcactccatcaaaatctgggacgttcgtgttccatcaagttcgaac
gccatcctcagcttcagccatggggatcccgtggagagtgtactattcttgccttccggt
ggacttctcgccactgcgggtggaaatgttgtcaagatttgggatgttatcggtggtggc
aggttgattcacacaatggaaggccacaacaagactgtctctgcactgtctcttggtagg
gttggaaacgctagtacggcccttggaggtggagaacccagactccttagtgtgtctatc
gatgggtacatgaaaagcttcgactttgcagcctttaagatcacacactccatgaggtac
cctgcgcagctgctttctatcggtttctccccatctggcaattctcgtgttgttgggaca
tcgaatggggtcatttacatgggaatgaaaaagaagctgctgcaagaagagaagggaact
ggaagtgctagtgtttttgatgggtatgctcctgagcctaagaagcaagttctaaagcca
accaactatagatactttcacagaggtcaaacagagaaaccacgagagactgattatccg
atcaagagagcaccaaaggtgaagcttgccgagcatgataagcttttgaagaagtttagg
cacagggaggctcttgtttcagttttgagtaaaaaggatccgactagtacagttgctgtg
atggaggagctagtgatcaggaagaaactgctaaaatgcgtggcaaatttagatgttgat
gagcttggtttgcttctgcgtttcctgcacaagtatgctaccatgccacgttatgcaagg
tttctaatgaacttagcaaataaggttattgagatgcgtccagaggatattcaatcaaat
aagcatttgagcaaacatgttggaagtcttaggcgcagagttgcagaagaaatcatgata
cagcgttctttgcaagagatacagggaatgatttcaccttttctcataatagctggacgt
tga
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