Zingiber officinale (ginger): 122039177
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Entry
122039177 CDS
T08725
Name
(RefSeq) WD repeat-containing protein 75-like
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122039177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122039177
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122039177
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
122039177
NCBI-ProteinID:
XP_042455037
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Position
1B:complement(80338971..80347127)
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AA seq
430 aa
AA seq
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MVCIACLLPLFLIPVVNALPLLFDLIVGKIYRLFGWEYRKPARVPAACPYKPASKNVDGL
NAVCYMWSNYINECSFWLLPVPMLIHIFFQVSCSDNHIHLLKMPTMDISKSISGIKPPFS
FPLKHEGSCTQVAFEQTTGLVAVSTEDYCVQFYSLFDNHEVSEVQVCKRNFQPADDVMLY
VALVAISLDGSLMATIDVTIPEEKLGGLVCLKYWTRGSLVAEYLLSTVIYEPHSDAQVSS
LAFRPGHNMAVTSSYGGDFKVWVHGSHADRNNESIQRTGWRCQSVGSYKGKSLTAAAFSA
DGSVLAIAAETIITLWDPDSNILVAMIGDTLSPITKPSFVGESEYLVSYTHGLKPQLSVW
STSNLALYWSHGIVTEAVSCSHDESQFAVLALLSSAGDADAKGNGVIFFFDVEDPVPVAT
WRLQRCSTRL
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggtctgtattgcgtgcctgttgcctttgttcttgatccccgtcgttaacgccttgcct
ctgctcttcgatctcatcgtcggtaagatctacaggcttttcggctgggaatacagaaag
cctgcaagggtgccagctgcttgtccatacaagcctgcttcaaaaaatgttgatggttta
aatgcagtgtgttacatgtggtctaattatataaacgagtgcagtttctggcttcttcct
gtgccaatgttaattcatatttttttccaggtatcttgttcagataatcacattcatctg
ctaaaaatgcctacaatggatatctcaaaatccatatcgggaatcaagcctcctttttcg
tttcctctcaaacatgaaggatcctgcacacaagttgcatttgagcagacaactggatta
gttgctgtttccactgaagattattgtgtacaattctatagcttgtttgacaaccatgag
gtttcagaggtccaagtgtgcaaaagaaattttcagcctgcagatgacgttatgctatat
gtggctcttgtagccatttctcttgatggctccttaatggctaccattgatgtgacaatt
cctgaagaaaaattagggggtttggtttgtctaaaatactggactcgtggttccctagtg
gcagagtacttattatccactgtcatatatgagcctcacagtgatgctcaagtttcatct
cttgcatttcgccctggacacaacatggctgtcacatcatcttatggtggtgattttaag
gtttgggttcatggttctcatgccgacagaaataatgaatcaatccagagaactggttgg
agatgccaatctgttggttcatacaagggaaaatcattaacagctgctgctttttctgcc
gatggatcagtccttgctattgcagctgagactataattacattatgggatccagattcc
aatattcttgtggctatgattggagatacactttcgccaattacaaagccttcatttgtt
ggggaatcagaatatctggtgtcctatacacacggtttaaagccacaactttcagtttgg
agtacttcaaatttggcattgtactggtctcacgggattgttacagaagccgtaagctgt
tcccatgatgaatctcaattcgccgtcttagctcttctcagttcagcaggtgatgctgat
gcaaaaggaaatggggtaatatttttcttcgatgtggaagatcctgttcctgtggcaacc
tggcgcctccagcggtgctccactcgcctctaa
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