Zingiber officinale (ginger): 122040430
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Entry
122040430 CDS
T08725
Name
(RefSeq) protein VACUOLELESS1-like
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
122040430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122040430
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122040430
Hops complex
122040430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
ANAPC4_WD40
DUF2968
Motif
Other DBs
NCBI-GeneID:
122040430
NCBI-ProteinID:
XP_042455678
LinkDB
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Position
2A:839099..849815
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AA seq
843 aa
AA seq
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MAAVSVAGEWQLLYNRFYRKLTIYSMQWGRIDLSRHRVAAAPFGGPVAAIRDDSKIVQLY
AESARRKLLIFNAAGRPLASAVWDRPGGRLVGMAWTDDQVLVCVVQDGTVYSYNVHAELC
APQFSLGKECFEQGVVECVFWGNGMVCITEGFQIFCVPDFKNPVPCKLADPGIEEYPLCV
AVIEPQYTMSGNVEVLLGVGDHVLIVEEDGVQQLGVGVGPFQKMAVSQNGKYLATFTHDG
RLLVILTDFSRIIFEYPCESSLPPEQIAWCGLDSVLLYWDEKELLMVGPNGTPVSYMYDE
PIRLIPECDGVRILSNSSMEFLQRVPDSTVSIFQVGSTLPAALLYDALEHFDRRSAKADE
NLRLIRSSLAEAVEACIDAAGHEFDLSRQRTLLRAASYGRAFCSQFTRDRFQEMCKILRV
LNAVRDHEIGIPLSIQQYKLLTAPVLTGRLINANHHLVALRISQYLSLNPEVVIMHWACA
KITASSAIQDSSLLEILLDKIKLCKGISYAAIASHADNSGRRKLAAMIVDHEPRSSKQVP
LLLSIQEEDSALVKAIDSGDTDLVYLVLFHIWQKKPALDFFGTINARPLARDLFITYSRS
YKHEFLKDFFLSTGRLPEVAILLLKESWKLEKNPMASKGSPLHGPRIRLIEQAQKLFSET
KEHNFEAKAAEEHAKLLRLQHDLEVSTKQAIFVDSSISDTIRTCIVLGNHREAARVRAEF
KVSEKRWYWLKAFALATVRDWDALEKFSKEKRPPGGYKPFVEACIDADEKAEAVKYIPKL
TEPRERSEAYARIGMAKEAAEAASQAKDSEELFGRLKLTLAQNTSASSILDTLRDRLSFQ
GVY
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtctccgtcgccggggagtggcagctcctgtacaaccgcttctaccgcaag
ctcaccatctactccatgcagtggggtcgaatcgacctctcccgccaccgcgtcgcggcc
gcccctttcggtggccccgtcgctgctatccgcgacgactccaagatcgttcagctctac
gccgagtccgctcgccgcaaactccttatcttcaacgccgccggccgccccctcgcctcc
gccgtatgggaccgccccggcgggcgcctcgttggaatggcctggaccgacgatcaggta
ctcgtttgtgtcgtccaggatggtaccgtctactcttacaatgtccacgccgagctttgc
gctccgcagttctccttgggaaaggagtgtttcgagcagggcgttgtcgagtgcgttttc
tggggcaacggcatggtgtgcattacggaggggtttcaaatcttctgcgtccccgatttc
aagaatccggtcccgtgcaagcttgctgatccgggaatcgaagagtacccactgtgcgtg
gccgtgatcgagccgcagtacaccatgtctggaaacgtggaagtgctgcttggtgtaggg
gatcacgtgctaatagtggaagaggatggggtgcagcagcttggggtcggcgtggggcct
ttccagaagatggccgtctctcagaatgggaagtatcttgcaacattcacgcacgatgga
cgtctgctggtcatcctgacggacttctctaggataatctttgaatatccttgcgagtct
tcattgcctccagagcagatagcttggtgtgggttagatagtgtgctgctctattgggat
gaaaaggagcttcttatggtgggtcctaatggaactccagtgagttatatgtatgatgaa
cccataagactcattcctgaatgtgatggcgtgaggattctgtcaaattcaagcatggag
tttcttcagcgagttcctgactctactgtttccatctttcaagttggtagcacattacca
gcagctctgctatacgacgccctggagcactttgataggcgcagtgctaaggctgatgaa
aatttaagattgattcgctcctcgttggccgaggcagttgaggcctgtattgatgctgct
gggcatgaatttgatctttcacgccaaaggacattgttgagagctgctagctatggtcga
gctttttgcagtcagtttacacgagatcgtttccaagaaatgtgtaaaatactaagagta
ctaaatgctgtccgcgaccatgaaattggaatccctctcagcattcagcaatacaagttg
ctcactgcaccagtattgactggacgcctgattaatgccaatcaccatcttgtggctttg
agaatttcacaataccttagcctaaacccggaggtggttataatgcattgggcttgtgca
aagataacagcttcatcggctattcaagattcttcactgctggagatcttgcttgacaag
ataaagttatgcaaaggcatatcttatgcagcaattgcctctcatgcagacaacagtggg
cgcagaaaattagctgccatgatcgttgatcatgaaccgcgttcatccaagcaagttcct
ttattattgagcattcaagaggaagactctgccttggtgaaagcaattgatagtggtgat
actgaccttgtttatctcgttctttttcatatttggcagaagaaaccagctttggacttc
tttggaacaataaatgcaaggcctttagctcgagatttgtttatcacatattcaaggtct
tacaaacatgagttcctgaaggatttctttctttcaacaggtcgactcccagaggtagct
atccttttgctaaaagaatcgtggaaattagaaaagaatccaatggcaagcaaaggatct
cctctccatggtccacggattaggcttattgagcaagctcagaagcttttctctgaaacc
aaggaacataactttgaagcaaaagctgcagaagagcatgcaaagctgctgagattgcag
cacgacttggaagtttccacgaaacaggcaatatttgttgactctagcatcagtgatacg
atacgaacatgcattgtgctgggaaatcatagggaggcagcgagagtaagggcagaattt
aaggtttctgagaaaagatggtactggctaaaagcatttgcactcgctacagttagagac
tgggatgctctagaaaagttttcaaaggagaaaaggccacctggcggttataaaccgttt
gtggaagcatgcattgatgctgatgagaaagctgaagccgtcaagtacattccaaaactt
acagagccaagagaaagatcggaggcttatgcacgcattggaatggctaaagaagctgct
gaagctgcttctcaagctaaagacagcgaagaactatttgggcgcctcaagctcacactg
gcacaaaatacgtctgcttcatccattttagacaccttgagggatcgattatccttccaa
ggagtctattag
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