Zingiber officinale (ginger): 122040506
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Entry
122040506 CDS
T08725
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122040506
03420 Nucleotide excision repair
122040506
03430 Mismatch repair
122040506
03440 Homologous recombination
122040506
03460 Fanconi anemia pathway
122040506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122040506
03032 DNA replication proteins [BR:
zof03032
]
122040506
03400 DNA repair and recombination proteins [BR:
zof03400
]
122040506
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122040506
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122040506
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122040506
MMR (mismatch excision repair)
122040506
DSBR (double strand breaks repair)
HR (homologous recombination)
122040506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
Hormone_4
Motif
Other DBs
NCBI-GeneID:
122040506
NCBI-ProteinID:
XP_042455778
LinkDB
All DBs
Position
2A:complement(2161001..2164759)
Genome browser
AA seq
846 aa
AA seq
DB search
MAAVDLSRGAIAAISEGRGEEGAKPVVQVWDLRLVNTQQTTTERYRMLLSDGTHMQQAML
ATQMNGIVKSGSLQKHSIVQLNEFICNVIQNRTIIIVINLDVLVSSNSAIGEPKMFDNGT
SLQNRASMPAQPSSVDQPAIAAANRQTYGLHSATPNIGQNVSGGASLHQQAEPRTNNPSF
GGNYGPVASRNMNIENIEHPKVEHGTGLLSESHPYSGNQNLRSNSTSVGVFRPPAISNVR
PAQSVDRQPPPMYSNRGPLARNEAPARIIPIAALNPYQGRWTIKARVTTKGDLRRYNNPR
GEGKVFSFDLLDSDGGEIRVTCFNTIADQFFDQIEVGKVYLISKGSLKPAQKSFNHLNNE
YEIFLESQSVIQPCLDEDPTILKQHFNFRAINEIEGLENNSMVDIIGVVTSINPSVSIMR
KNGTETNKQTLQLKDMSGRSVDVTLWGNFCTMDGKQLQSMCDSGVNPILAIKAGRVSDFG
GKSVGTIMTSQLFINPDFTEAHRLREWCNGEGKTMAAPSISRDATTMGRHDVRKSVAQIK
DEGLGRSEKPDWITVKATVTFVKVDNFCYTACPLMVGDRSCNKKVNNNGNGTWHCDRCDQ
DFPECDYRYLLQFQIQDHTGMTWVTAFQECGEEILGVAAKELYLLKYEEQDDMKFAEIIR
TVIFHQYLFKLKVKEETFSDEQRVKSTVVKVERINPSAESRFVLGLIEKLSTKDPNVSAG
AHGTFTSTSEISTSMYGSVESNCNIYAATNNYSPFHNPDGYRMGAPTNQSAQYSNNYGGV
IKQNFNQNEVQLHCNNCGGNGHSFQNCPRGINWQAQQSDPGAGTFAAAYGGSGTSGRFTR
QHVGGF
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggtggatctgagtcggggagcgatcgcggcgatatcggaggggcggggggag
gagggcgctaagccggtggtgcaggtgtgggatttgaggttggtgaacactcagcagacc
accacggagaggtaccggatgttgctgtccgacgggactcatatgcagcaggccatgctc
gcgacgcagatgaatgggatcgtcaaatcggggtctcttcagaagcactccatcgtccag
ctcaacgagttcatctgcaacgtcatccagaaccgcacaattattattgtcatcaacctg
gatgtccttgtcagtagtaacagcgctataggagaaccaaaaatgtttgataatggtact
tctttacaaaaccgagcttcaatgcctgctcagccatccagtgtagatcaaccagccata
gctgcagctaatcgtcaaacatatggtctgcactctgctactcccaacattggacagaat
gtttctggaggagcttctctgcatcagcaggctgagcccaggacaaacaacccatcattt
ggtggtaattatggtcctgtggctagtaggaatatgaacattgagaatattgaacatcca
aaagttgaacatggtacggggctgttgtctgagtcacatccatatagtggtaaccagaac
ctgaggtcaaattcaacatcagttggtgtgttccgtccacctgccatttctaatgtgcgt
cctgcccagtctgttgatcggcagccccctccaatgtactcaaatagggggcctttagct
agaaatgaagctcctgctcgaattatcccaattgctgctttgaatccttaccagggcaga
tggacgattaaggcaagagtaacaactaaaggggaccttaggcgctataacaatcctaga
ggagaaggaaaagtcttttcttttgatcttctggattctgatggtggagagatacgagtc
acttgctttaacacgatagctgatcagttctttgatcagattgaagttggtaaagtttac
ctgatttctaaaggtagcttgaagcctgcccagaagagctttaatcatctgaataatgaa
tatgaaatctttttagaatctcagtcagtcattcagccttgtttagatgaagaccccacc
attctgaagcaacacttcaactttcgtgcaataaatgaaattgaaggcctggaaaacaat
tcaatggtcgatataattggcgttgtcacttcaataaatccttcggtttcaatcatgagg
aaaaatggcactgaaactaataaacaaactcttcagttgaaggacatgtcgggccgaagc
gtcgatgtgactttgtggggaaatttttgtaccatggatggtaaacagctgcaaagtatg
tgtgactctggtgtgaatcctatattggcgattaaagctggtcgagttagtgattttggt
ggaaaatcagtaggtactatcatgaccagccaactgtttataaatcctgattttactgag
gcccacagattgagagaatggtgtaatggtgaagggaagactatggctgctccttcaata
tccagagacgccaccaccatgggtagacatgatgttcggaagtctgttgcacagatcaag
gacgaggggttgggaaggtcagagaaacctgactggataactgtcaaggcaactgttacg
ttcgtaaaagttgataatttctgctatacagcttgtccactaatggtgggggacagatca
tgcaataaaaaggttaataacaatggtaatggcacctggcattgtgatcgctgcgaccag
gattttcccgagtgtgactacagataccttctccagtttcagatccaggatcatacaggc
atgacctgggttactgcattccaagaatgcggggaggagattttgggcgtcgctgccaag
gagctttacttgttgaaatacgaggaacaagatgatatgaagttcgcagaaatcatccgg
acagtcatcttccatcaatacttattcaagttgaaagttaaagaagagacattcagtgat
gagcaacgtgtgaaatcaaccgttgtcaaagtcgaaagaataaatccatctgctgagagc
aggtttgtcttgggtctgattgagaagctctcgactaaagatcccaatgtctctgcgggg
gcgcacgggactttcacttcaacttctgagatttctacctccatgtatggctctgttgaa
tcgaactgtaatatctatgctgctaccaataactatagcccctttcacaaccctgatgga
tatagaatgggagcaccgacaaaccaatcagcccagtattcaaataactatggtggagtc
atcaaacaaaattttaaccaaaacgaagttcaactacattgtaacaattgcggcggcaac
ggtcacagcttccaaaattgtccaagaggcataaattggcaagcacaacaatctgatcca
ggagctggaacctttgcagcagcatatggcggttctggcacatcaggaagattcaccaga
caacatgtaggtgggttctga
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integrated database retrieval system
