Zingiber officinale (ginger): 122040614
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Entry
122040614 CDS
T08725
Name
(RefSeq) ubiquitin C-terminal hydrolase 12-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
122040614
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
zof01002
]
122040614
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122040614
Enzymes [BR:
zof01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
122040614
Peptidases and inhibitors [BR:
zof01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
122040614
Ubiquitin system [BR:
zof04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
122040614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH_2
MATH
UCH_1
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
122040614
NCBI-ProteinID:
XP_042455919
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All DBs
Position
2A:5848486..5879423
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AA seq
1122 aa
AA seq
DB search
MDLGSNLRARARVCLQQQEDEEMLVPHRELTEGPQPMEVLSAETVSASENQQVEDPPTLK
YRWTIENFSRLNTKKLYSDIFHVVGYKWRVLIFPKGNNVDHLSLYLDVADSATLPYGWSR
YAQFSLAVVNQIHGKYTIRKDTQHQFNGRESDWGFTSFMSLSELYDPSRGYLVNDTCVIE
AEVTVRKVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND
MPSGSIPLALQSLFYKLQYSDNSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDK
MKGTVVEGTIQHLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEV
ERLEGDNKYQAENHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQ
LDLDKDNGKYLSPDADRRVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSHLWFKFDDEKV
TKEDAKKALEEQYGGEEELPQTNPGLNNTTFKFTKYSNAYMLVYIRESDKEKIMCDVDEK
DIAEHLRIRLKKEQEEKEHKKKEKAEAHLYTIIKVARNEDLMEQIGKEIFFDLVDHDKVR
AFRIQKQLPFNHFKEEVFKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTPQEETQSVGQLR
EVSNKTHNAELKLFLEVEIGPDLHFLPPPSKTKEEILLFFKLYDPEKEDLKFVGRLFVKS
LGKPTEVFSKLIEMAEFPPNEEIDLYEEIKFEPTVMCEHIDKRISFKSSQLEDGDIICYQ
KSLTSTNRNQFRYPDVPSFLEYVRNRQVVFFRALEKPKEEDFSLELSKLFTYDDVVERVA
RQLGVDDPSKIRLSSHNCYSQQPKPQPIKYRGVDHLVDMLVHYNQTSDILYYEILDIPLP
ELQGLKTLKVAFHHAIKEEVVIHIIRLPKNSTVADVINDLKTKVELSRPDAEVRLLEVFY
HKIYKIFPPGEKIENINDQYWTLRAEEIPEEEKSLGLHDRLIHVYHFTRDSNQNQMQVQN
FGEPFFLVIKEGETLTDIKIRIQKKLQVPDDEFSKWKFAFISLGRPEYLQDSDIVSNRFQ
RRDIYGAWEQYLGLEHSDTAPKKAYTTNQNRHTFEKPVKIYN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atggatctgggctctaatttgcgcgcgcgtgcgcgtgtgtgtttgcagcagcaggaggac
gaggagatgttggtcccgcatcgggagttaacggagggaccccagccgatggaagtttta
tcagctgagacagtcagtgcttcagaaaaccagcaggtggaggatcctcctacgttaaaa
tacaggtggacaattgaaaacttctccaggttgaataccaagaaactttattctgacatt
ttccatgtcgtggggtataaatggcgggtgctaatttttcccaagggaaataatgtagac
cacttgtctttataccttgatgttgctgattcagctactttgccatatggttggagtaga
tatgctcagttctcacttgcagttgtcaatcaaattcatggaaagtacacaataagaaaa
gatacacaacaccaatttaatgggcgagaaagtgattggggtttcacttcgtttatgtct
ctaagtgaactctatgatccaagtagaggatatctagtcaatgatacatgtgtaattgaa
gctgaagttactgtacgtaaagttgtagattactggagttatgattcaaaaaaggaaacc
ggctatgttggtttaaaaaaccaaggagctacttgttacatgaattctctccttcagact
ttgtatcatattccatacttcagaaaggctgtttatcatatgccaacgacagagaatgat
atgccatcagggagcattcccttggcactgcagagtctgttctataagcttcagtacagt
gacaacagcgttgccacgaaggaattgacaaaatcttttggttgggatacatatgattct
tttatgcaacatgatgtgcaagaacttaatagggttctttgtgaaaagttggaagacaag
atgaagggaactgtggttgagggcacaatccagcatttatttgaaggacatcacatgaat
tatattgaatgcattaatgtcgactataaatccactcgaaaagagtcattctatgattta
cagctggatgtaaagggttgccgagatgtttatgcttcatttgataaatatgttgaagta
gagcggcttgaaggggataataaatatcaagctgaaaaccatgggttacaggatgctaag
aaaggtgttctattcattgacttccccccagttttgcaactccagcttaaacgttttgaa
tatgatttcatgcgagatacaatggtgaagataaatgatcgttacgagtttccacttcag
ttggaccttgataaagataatggtaaatatctttctcctgatgcagacaggagggttcga
aatctctatactcttcacagtgttcttgttcacagtggcggggtgcacggtggacattat
tatgctttcatccggccaactctatcacatctgtggtttaagtttgatgatgagaaagta
acaaaggaagatgctaaaaaggcactcgaggagcagtatggtggtgaagaggagttacct
cagacaaatccaggcttgaacaatacaacttttaaatttacaaagtattccaatgcttat
atgcttgtgtacattcgtgaaagtgacaaggagaaaattatgtgtgatgttgatgagaaa
gacattgcagaacacctcagaattaggttgaagaaggaacaagaagagaaggagcacaag
aagaaagagaaagctgaggctcatctgtatactatcataaaggtagctcggaatgaggat
ttgatggaacagatcggaaaggaaatattttttgatcttgtagaccatgacaaagttcga
gcctttcgcatccaaaagcagttgccattcaatcattttaaggaggaggtgttcaaagaa
tttggtattccagttcagtttcagcggttctggttgtgggccaagcgacaaaaccataca
tatcggcccaatcggcctttgacaccccaggaggaaacacagtctgttggacagcttagg
gaggtttcaaataagactcataatgctgaattgaagctgttcttggaagtagaaattgga
ccggaccttcactttcttcctccaccatcgaaaaccaaggaggagatattacttttcttc
aagctatatgatcctgaaaaagaagatctgaaatttgtaggaagactattcgtgaagtct
ctgggaaagccaactgaagttttctcaaaattgattgaaatggctgaatttcctccaaat
gaagaaattgatctttatgaggaaataaagttcgaaccaactgtcatgtgtgagcatatt
gacaagcggatatctttcaaatcaagccagcttgaagatggagatatcatttgctatcaa
aaatctttaacatcaacaaatagaaaccagtttcggtatcctgatgttccttccttcttg
gagtatgttcgcaaccgccaggttgttttttttcgggctttggagaagccaaaggaggag
gatttttccttggaattatctaaacttttcacatatgacgatgttgttgaaagggttgca
cgtcaacttggtgtagatgatccatcaaaaattcgtctttcatctcataactgctattct
cagcagcctaaaccacaacccattaagtaccggggtgtggaccaccttgtagacatgctt
gttcattataaccagacttctgacattttgtactatgagatattggatattcctctgccc
gaattgcaaggtttaaaaactctgaaagtagcattccatcatgccataaaggaagaggtg
gtaattcacatcatcagacttcctaagaatagcaccgtagctgatgtaatcaatgaccta
aagaccaaggttgagctctctcgtcctgatgctgaagtcagattacttgaggttttctat
cacaagatctacaagatatttccaccaggtgagaaaattgaaaacattaatgatcagtac
tggactttacgtgcagaggagattccggaggaagagaaaagccttggccttcatgatcgc
ttgattcatgtctatcactttactagagattctaatcagaaccaaatgcaagttcagaat
tttggagagcctttcttccttgttattaaggaaggtgagactttaaccgatatcaaaata
cgcattcagaagaaactgcaagttcccgatgatgaattttcaaagtggaagtttgctttt
atatcacttggacgtcctgaatacctccaggattcagacattgtatccaatagatttcag
agaagagatatttatggagcctgggagcagtatcttggtttagagcattccgacactgct
ccaaaaaaagcttacacgactaatcagaaccgtcacaccttcgagaagccagtgaaaatt
tataattga
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