Zingiber officinale (ginger): 122040681
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Entry
122040681 CDS
T08725
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
122040681
Enzymes [BR:
zof01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
122040681
Transfer RNA biogenesis [BR:
zof03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
122040681
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Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
Flavodoxin_5
Motif
Other DBs
NCBI-GeneID:
122040681
NCBI-ProteinID:
XP_042456039
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Position
2A:complement(10064071..10070311)
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AA seq
647 aa
AA seq
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MVGIVLASLPSPRLALFAFLSATSLYFLWKSRRCRLQPSASSLKPANPSPRGKILYASAT
GTSRSLAGRLSARLRSHGLPFDLVDPRRYEPEDLPKENVVLIVASTWEDGRPPPDAQFLS
RWLAESAADFRVGSLLLARCRFAVFGVGSRSYGDSFNAAAKDFSKWMRALGASEMAPLWE
GDMDSGDVDDVFELWCRKIVGLLKGDSVAEDGHFDSMAENNGLEVSDEDSDEETEVEDLE
SAVVDMEDIAGKAPSRKLAVAPTNGRENGVRDMVTPVIRTNLEKQGYKIIGSHSGVKLCR
WTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDNP
LEIVDAVVSEHTKMIKQMKGVPGVKTERLSEGLSPRHCALSLVGEPIMYPEINALVDELH
RRHISTFLVTNAQFPDTIRMLKPITQLYVSVDAATKDSLKAIDRPLFGDFWERFLDSLKA
LRDKEQRTVYRLTLVKGWNAEDLDAYANLLSVGKPDLIEIKGVTYCGSSATSKLTMDNVP
WHSDVKAFSEALARKSSGEYEVACEHAHSCCVLLAKVDRFKINGEWHTWIDYDRFHELVV
SGKPFRTEDYMARTPSWAIYGAEEGGFDPYQSRYKKERRHGTASLRN
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggtcggcatcgtccttgcttctctaccttctcctcgcctcgcgctcttcgccttcctc
tccgccacttccctctatttcctctggaagtcacgccgctgccgccttcagccctctgcc
tcctcgctgaaacccgcaaacccaagccccaggggcaagatcctctatgcatccgccacc
ggcacgtccagatcccttgctggccgcctctccgctcgcctccgttcccacggtctcccc
ttcgacctcgtcgacccccgccgctacgagccagaggatcttcccaaggaaaacgtcgtc
ttgattgtggcatccacgtgggaggacggaaggccgccgcctgacgcccagttcctctcc
agatggctcgcagagagcgccgcggacttcagggtcgggtcgctgctcctggccaggtgc
cggttcgcggtattcggggtcgggtcgaggtcgtacggggacagttttaacgcagcggcg
aaggatttctctaagtggatgagggcgctcggggcctcggagatggcgccattgtgggag
ggagacatggattctggcgatgttgacgatgtatttgagttgtggtgtcggaaaattgtg
ggattgctcaagggagactctgtagcggaggatggacattttgattctatggcagagaac
aatgggcttgaagtttctgatgaagattctgacgaagaaacggaggtggaggacctcgaa
tcggctgtggtagatatggaggatattgccggtaaagctccttcaagaaagcttgctgtt
gctccgaccaatggtagggagaatggtgtcagagacatggtgacaccagttattaggact
aacttagagaagcagggatataaaattattggttcacatagtggggtaaaactatgtagg
tggacaaagtcacagcttcgtggccgtgggggttgttacaagcattcattttatggtatc
gagagtcatagatgtatggaagcaactcctagtttggcttgtgcaaacaaatgtgtattc
tgttggaggcaccacacaaatcctgttggcaagagctggcaatggaaaatggacaatcct
cttgagattgtagatgctgtagtcagtgagcataccaaaatgattaagcaaatgaaaggt
gttccaggtgtaaagacggaacgtttgtctgaaggtctttctcctagacattgtgctttg
tcacttgttggtgaaccaatcatgtatcctgagattaatgcacttgttgatgagttacat
cggagacatatatctactttccttgtcacaaatgctcaatttccggatacgataaggatg
ctgaagcccatcactcagttatatgtcagtgtagatgcagctacaaaagatagccttaag
gctattgataggccactctttggtgacttttgggagcgttttctggattcactaaaagca
ttgcgagacaaagaacaacggactgtttaccgcttaactttggttaaaggatggaatgca
gaagatttagatgcatatgcaaacttgctgagtgttgggaagcctgacttaattgaaatc
aaaggagtgacttactgtggctcgtctgctacatcaaagttgacaatggataacgtccct
tggcattctgatgttaaagccttttcagaggctttggccaggaaaagcagtggtgaatat
gaagttgcctgtgagcatgctcattcttgctgcgtccttctggcaaaagtcgacaggttc
aagataaatggtgaatggcacacatggatagactacgaccggtttcatgagctggtggtt
tcaggaaagccatttaggacagaagactacatggctcgcacaccatcctgggctatctat
ggtgccgaagaaggtggatttgatccatatcaatctcgatacaagaaagagaggcgtcat
ggaactgcaagccttcggaattag
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