Zingiber officinale (ginger): 122040761
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Entry
122040761 CDS
T08725
Name
(RefSeq) protein argonaute 1B-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122040761
03036 Chromosome and associated proteins [BR:
zof03036
]
122040761
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122040761
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122040761
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
122040761
microRNA pathway
RISC loading complex
122040761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
ArgoN
PAZ
Gly-rich_Ago1
ArgoL1
ArgoL2
ArgoMid
E1_UFD
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
122040761
NCBI-ProteinID:
XP_042456120
LinkDB
All DBs
Position
2A:13218056..13227968
Genome browser
AA seq
1069 aa
AA seq
DB search
MVRKRRTDASGSGESSEYQEPSGSAERAGPQRGPAPQQQGGARERGWVASGSQQAQQGGR
GGGGYYQGRGSHPQPRDPEQPFAPSYQGRGGHQFRGGMPYQQQYGGRRGGRSAAGGRGFG
PSAAGSTRPPVPELHQATQAPYQPTQPGPLQASSSRQSEMSTSEVVEQFQQLSVEGESSS
QEMQPIVPPASSSKSVRFPVRPGKGTNGARCVVKANHFFAELPDKDLHQYDVSITPEVTS
RGVNRAVMEQLVRLYRESYLGGRLPAYDGRKSLYTAGPLPFTLKDFQIILVDDDDGSGTE
RRQRTFRVVIKLAARVDLHHLGMFLAGRQADAPQEALQVLDIVLRELPTARYLPVGRSFY
SPDLGRRQHLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVIELLNRDV
QSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTVKSV
VQYFQETYGFTIQHTSWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVT
CQRPHDRELDILQTVHHNAYHEDPFAREFGIKISEKLASVEARVLPPPWLKYHDTGREKN
CLPRVGQWNMMNKKMVNGGRVNSWTCINFAKNVQDNLARGFCHELAQMCQISGMEFSLDP
VLHPLTARPDHVERALKARYHDAMSILQPQGKELDLLIVILPDNNGSLYGDLKRICETDL
GLVSQCCLTKHVFRMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGAD
VTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKVWQDPQRGTLTG
GMIKELLISFKKATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVT
FVVVQKRHHTRLFANNHGDHQSVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSR
PAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPET
SDSGSLASGAAAGRGFPPGGARATRGPGTAAVKPLPALKENVKRVMFYC
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggaagcgcagaactgatgcttctggttcaggtgaaagctcagaatatcaagag
ccaagtggttctgcagagcgggcagggcctcaacggggtcctgctccacaacaacagggt
ggtgctagagagaggggctgggttgcttctggctctcaacaggcccagcaaggcggccga
ggtggtggtgggtattaccaggggcgaggcagccatccacaacctcgtgatcctgagcag
ccttttgcaccatcttaccaaggtcggggtgggcatcagtttagaggtggaatgccgtat
cagcaacagtatggaggacggcgtggtggtcgtagtgcagccgggggacgtgggtttggc
ccctctgctgcaggttcaactaggccaccggttcccgagctgcaccaagcaacgcaagct
ccatatcaacccacccaaccaggaccactgcaggcaagttcttcacgacagtcggagatg
tctacttctgaggttgtagaacagtttcaacaactctctgtggaaggtgaatcttctagt
caagaaatgcagccaatagttccgccagcttcttcgagcaagtctgtgagatttcctgtt
cgtcctggaaaaggtaccaatggagctagatgtgtggttaaggctaaccatttttttgct
gaactccctgataaagatcttcaccagtatgatgtatctatcactcctgaagtaacatca
cgtggtgtaaatcgtgctgtgatggaacagttggtcagactttatagggaatcatatttg
ggagggcgtcttccagcttatgatggaaggaagagtctctatactgctggtcctttgcca
tttaccttaaaagattttcagatcattctagtggacgatgatgatggttctggcacagaa
aggcgccaaagaacatttcgtgttgttattaaattagctgctcgtgttgatcttcatcac
cttgggatgtttttagctgggaggcaggctgatgctcctcaagaagcattgcaagtactg
gatattgtactacgtgaattacctactgccagatatttgcctgtcggacggtccttttat
tcacctgatctgggaagaaggcagcatcttggtgaggggcttgaaagttggagaggtttt
tatcagagcattcgccctacccaaatgggcctttctctgaatattgatatgtcctccaca
gccttcattgagccattgcctgtcattgaatttgttattgagcttcttaatagggatgtc
caatcaagacctctttctgatgctgatcgtgtgaagatcaagaaggccttgagaggtgtg
aaggtggaggtcactcaccgggggaatatgcgcagaaagtaccgcatatctggtttaaca
tcacaagcaactagagagctaactttcccagttgatgagaggggtacagtgaagtctgtt
gtacaatattttcaggagacttatggttttactatccagcacacaagttggccatgtttg
caggttggtaatcagcagaggccaaattatttacctatggaggtttgtaaaattgtggaa
ggccaaagatattctaagagactgaatgagagacaaatcactgcactcttaaaggtgaca
tgtcaacggcctcatgatagggagctggacattttacagacagttcatcacaatgcttat
cacgaagatccttttgctagagaatttgggatcaaaattagtgagaaacttgcttcagtt
gaggcccgtgttctgcctcctccttggcttaagtatcatgatactggcagggagaaaaat
tgcttgccaagagttggtcagtggaatatgatgaacaagaaaatggtaaatggtgggaga
gtgaatagctggacatgtatcaattttgcaaagaatgtgcaagataatttggctagggga
ttttgtcatgagcttgctcagatgtgtcagatatcaggaatggaattttctctagatcct
gtgcttcatcctctaactgctcggccagatcatgttgaaagagcgctgaaagcacgctat
catgatgcaatgagcatactccaacctcagggaaaggagcttgatttgctcattgtaata
ttgcctgataataatggctctctttatggtgatctaaaacggatatgtgagactgacctt
ggtttagtttcacaatgttgtttgacaaagcatgttttcaggatgagtaaacaatacctt
gccaatgttgccctcaagatcaatgtaaaggttggaggaaggaacacagttcttgtcgat
gcattgtcaaggcgcattcctcttgttagcgaccgaccaactataatatttggtgctgac
gtaacacatcctcatcctggggaagattctagcccttctatcgcagctgttgttgcgtct
caagactggcctgaggtgacgaaatatgctggattggtctgtgctcaggcccatcggcaa
gaattaattcaagatctgtttaaggtctggcaagatcctcagcgaggaactcttactggt
ggcatgataaaggagctacttatttccttcaaaaaggctactggacaaaagcctcaacgg
attatattctacagggatggagtgagcgagggtcaattctatcaagttctactatatgaa
ctggatgcgatcagaaaagcctgtgcttctttagaaccaaactatcaacctccagtgact
tttgtggtggtccaaaaacgtcatcacactagactgtttgctaacaatcacggtgaccat
caatctgttgataagagtggaaacatattgcctgggactgttgttgattctaagatatgc
catcctacagaatttgatttctacttgtgcagccatgcaggcattcaaggtacaagccga
ccggcccattaccatgtcttgtgggatgaaaataaattcacagcagatggtctgcaaact
ctgacaaacaacctctgttacacgtatgcaaggtgcactcgctctgtatctatagtgccg
cctgcttactatgcccatctagctgcattccgggctaggttttacatggaaccagagaca
tcagatagtggttctctggcaagtggagcagctgctggacgtggatttccaccgggtggg
gcgcgggcaaccaggggccctggcactgcagctgttaaacctcttccagccctgaaggag
aacgtcaagagggtcatgttctattgttaa
DBGET
integrated database retrieval system
