Zingiber officinale (ginger): 122040777
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Entry
122040777 CDS
T08725
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122040777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122040777
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122040777
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
122040777
NCBI-ProteinID:
XP_042456143
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Position
2A:13734990..13739225
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AA seq
886 aa
AA seq
DB search
MERGSERDRGSRKSSRDYDRTRERESSGDHHRDRDRKQRHHHRSSKNSDEKRYQEDDRRH
RAREFTPSDTEADRGPHRERSSSRARDSADRELSEERRHSSKRKEYWDEEDLEKNGKRAR
ILDEEREGKRERRRFEDHKEEKKDAKSSKSRKREEHYKDKDEVKQDGKVKDEILSDDDDK
KRQQKEGRKFTDTMKAEKKEVKLQYELLNKKEIKDERISKDKLKEENPESDQEAAARESF
YLDSMVSTNSDASHYPLLTKVSSFNTPNENEGVSIRSDEVPGKSSTDGLATSVAIKSGSL
SLDALAKAKRALQMQKELSEKLKKIPALNRVVSSSTVNTQVLSDKAGVKFSAAGAFQHAP
SGSLASSSVAHVQAIPSAPEVAPSGNLSAMGGAGVLPGLSNIRNIEAVKRAQELAAKMGF
HQDPEFAPLINMFPGQLPIDMAISQKPSKAPVLRLDAQGREIDEHGNIINMPKPTNLSTL
KVNINKQKKEAFQIIKPDLDNIAATTSHFDESMGINKTKLLRPKRMAFQFVEEGKWSKQA
EIMKFKSQFGEAQAKELRIKQTQLARAKAEPESNPNLIAVGVRIKKEKQKDEIPEIEWWD
KPLLPGASYDDDDVEQKLNIEKITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQ
RRLAKERDRQEMIRQGLLEPPKPKVKMSNLMKVLGSEATQDPTKLEMEIRSAAAEREQAH
VDRNIARKLTPAERREKKEKKLFDDPSSLETFVSVYKIKDLSHPQTRFKVDVNAQENRLT
GCAVISDGISVVAVEGGRKSIKRYGKLMLRRINWAAAVGNEEEGTEDTNAPANSCALVWQ
GSAAKPSFNRFLVHQCRSEAAARKIFLDAGVPHYWDLAVNFVEELA
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggagaggggctccgagcgggatcgagggagccgcaaatcctccagggattacgatcgc
acccgcgaacgtgaatcctctggggatcaccatcgtgaccgcgaccggaagcaacggcat
caccaccgcagcagcaaaaactcagacgagaagcgctatcaggaggacgatcgacgccac
cgcgctagggaattcactccctccgacactgaggcggaccgtggtccacaccgcgagcga
tcgtcgagccgggcgcgcgactctgcggaccgcgagttgtccgaggagcggcgtcactcg
agtaagcgaaaggaatattgggacgaggaggatttggagaagaatgggaagagggccagg
atcctggatgaggagagggaaggcaaacgggagaggcgtcgttttgaggaccacaaggag
gagaagaaagacgccaaatcctcaaagagtaggaagagggaagaacattacaaggacaag
gatgaggtaaaacaggatgggaaggtgaaagatgaaattttgagtgatgacgacgataaa
aagagacaacaaaaagagggcagaaaatttactgataccatgaaagccgaaaagaaggaa
gtgaagcttcaatacgagttacttaataagaaagagatcaaggatgaacgaatttctaaa
gataaattgaaggaagagaatccagagagtgatcaggaggctgctgctagggaatcattc
tatttggattcaatggtttctacgaattctgatgcatctcattatcccctgctcaccaag
gtatcttcatttaatacccccaatgaaaatgagggagttagtattagatctgatgaggtt
cctggaaaatccagtacagatggcttagcaacttcagttgctatcaaaagtggcagcttg
tctcttgatgctttagcaaaagctaaaagagctctacagatgcagaaggagctgtctgag
aagctgaaaaaaatccctgcgctaaacagagttgttagctcaagcactgttaacacacaa
gttttgtctgataaagccggagttaaattttctgcagcaggtgcattccaacatgctccc
tctggttctctggcttcttcgtctgtagcccatgttcaggcaattccaagtgcaccagag
gttgcaccatcagggaatttgtctgcaatgggaggggctggtgtccttcctgggctgtca
aacatacgcaatattgaagctgtaaagcgtgcacaagaacttgctgcaaagatgggtttc
caccaggatccagaatttgcacctcttattaatatgtttcccgggcagttacccatcgac
atggctatttctcagaaaccttccaaggctcctgttctccgcttagatgcacagggtaga
gaaattgatgaacatgggaatattatcaacatgcctaagccaacaaatcttagcaccctt
aaggtcaacattaacaagcaaaagaaagaagcttttcaaataataaaaccagatttagat
aacattgcagcaacaacttctcattttgatgagagtatgggaataaataaaactaagctg
ttgaggcccaaaaggatggcatttcaatttgtggaggaaggcaaatggtcaaagcaagca
gagataatgaaatttaagagtcaatttggagaagcacaagctaaggagttaaggattaag
caaacccagcttgcaagggcaaaagctgagccggagagcaatccaaacctgatagcagta
ggagtgaggattaagaaggagaaacagaaggatgaaatacctgaaattgagtggtgggac
aaacctttactacctggagcatcttatgatgatgatgatgtggaacaaaaacttaatata
gagaaaattacaatttatgtggagcaccctagaccaattgaacctcctgcagagccagcc
cctccaccaccacagcctctcaagctgacaaagaaagagcaaaagaagcttaggacccag
aggcgtcttgcgaaagagagggatcggcaggagatgatcagacaaggcctcctagagccc
cccaagcctaaggttaagatgagtaacctaatgaaagttcttggttctgaagcgactcaa
gacccaacaaaacttgaaatggaaattcgtagtgctgctgctgagcgtgaacaagcacat
gtggacagaaacattgcccgcaagctgacacctgctgaacgacgcgaaaagaaagagaag
aagctttttgatgatccaagttcacttgaaacttttgtttctgtgtacaagatcaaagac
ctctcacacccacaaacacgtttcaaagtcgatgtgaatgcacaggagaataggctgacc
ggatgcgctgtgatatcagatggcattagtgttgtggctgtggaaggaggtaggaaatcg
ataaaaaggtacgggaagctgatgctaagaaggatcaactgggctgctgcagtgggcaat
gaggaagaggggaccgaggatacaaatgcccctgccaacagttgtgctttggtctggcag
ggtagtgctgctaaacctagcttcaacaggtttcttgttcaccaatgcagaagtgaagct
gctgctaggaagatatttcttgacgctggagttccacattactgggatctggctgtcaat
ttcgtggaggaactagcgtga
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