Zingiber officinale (ginger): 122040915
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Entry
122040915 CDS
T08725
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14-like
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122040915
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
122040915
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
122040915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
AAA_19
IstB_IS21
TBSV_P22
Motif
Other DBs
NCBI-GeneID:
122040915
NCBI-ProteinID:
XP_042456340
LinkDB
All DBs
Position
2A:20878105..20955729
Genome browser
AA seq
2082 aa
AA seq
DB search
MLVPLPRLTSSFRAPYDVDQAYLRRKRILRNLKSRRANDEPELARKLIPHWDEASAELHQ
AYRQFVGSVVELVNGEVSSEEFREVAKTAYDLFGHFHMDNDLTKSVTQKKIELQRLIGYN
IEDAILQKMASLAQRLYVLQHSPNNALVAQEIGADGCGDSTIEFGSDLSFQVPSRFVLDV
PSENVTTLSSDFLPTSAFDDNHYSHTHFANHDSTTDQRTGSLKWLKDACDMIVQHDGASQ
ISGDELAMALCRVLLSNKAGDEIAGDLLDLVGDGSFETVQDLLLHRKELVNAIQHGLFIL
KSEKISSNNQPKMPSYGTQVIVQTESERQMDKLRRKEEKRNKRLGEYGNTLDFPVESFYS
LLLASQKKQPLDDLIGIGHGLNSVLISALPEGTIRLHNSGYEEVRIPPTPTAAMKPHEKL
IEIKELDDFAQAAFQGYKSLNRIQSHIYQTTYNTNENILVCAPTGAGKTNIAMISILHEI
KQHFRDGFLHKDEFKIVYVAPMKALAAEVTTTFSRRLSPLNLAVRELTGDMQLSKNELEE
TQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVEST
QSMIRIVGLSATLPNYLEVGQFLHVNPDNGLFFFDSSYRPVPLAQQYIGITEKDFYKKNA
LFNSICYEKVLDSIKQGHQAMVFVHSRKDTGKTARTLNELALNSGDLELFGNDTHPQFAL
IKKEVSKSRNRELVELFESGFGIHHAGMLRSDRALTERLFSDGLLKVLVCTATLAWGVNL
PAHTVIIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIILTTHDKLAYYLR
LLTSQLPIESQFINSMKDNLNAEVVLGTVTNIKEACAWLGYTYLFIRMKTNPLVYGIPWD
EVIADPSLVSKQRSLITDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYLQYSSVETY
NEMLRRHMSDSEVINMVAHSSEFENIVVREEEQDELENLFKMLCPLEVKGGPTDKHGKIA
ILIQVYISRGSIESFSLISDAAYISASLGRIMRALFEICLRRGWCEMSALMLQYCKAVDL
QIWPHQHPLRQFERDLSAAVLKKLEERGTDLDHLFEMEEKDISALIRYAPGGKLVKQYLS
YFPIINLSATVSPITRTVLKVDLLITPEFNWKDRFHGTSKRWWILVEDSENDHIYHSELF
TLTKRMARPEPQKLSFTVPIFEPHPPQYYIRAVSDSWLHAESLYTVSFHNLTLPEMQISH
TELLDLKPLPVGSLGNKTYKNLYKFSHFNPIQTQAFHVLYHLDNNVLLGAPTGSGKTISA
ELAMLHLFDTQPDMKVVYIAPLKAIVRERMNDWKRRLVSPLGKKMVEMTGDFTPDLMALL
SADIIISTPEKWDGISRSWKNRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQ
TTRSIRFVGLSTALANACDLASWLGVEENGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQLAASDESPRKFLNMPEESLEMI
LSQITDNNLRHTLQFGIGLHHAGLNDRDRSLVEELFSNNKIQILVCTSTLAWGVNLPAHL
VIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE
PFPVESNLREHLHDHINAEVVSGTISHKEDAVHYLTWTFLFRRLVLNPSYYGLEDTDANT
LNSFLSSLVLNTFEVLEDSGCIKINENSVEPLMLGSIASQYYLSYRTVSMFGANIGPDTS
LETFLGILSAASEFDELPVRHNEENHNKALSEKVPYMVDERRLDDPHVKANLLFQAHFSR
IELPITDYVTDLKSVLDQSIRIIQAMIDISANSGWLSSTMTCMHLLQMIMQGLWYGNESS
LWMLPCMNKDLLSHLKNIGISSLQDLLELPKEKFNQKLQKFATDLYKDLQHFPRIRVRVK
LQYRDGKASEPEALNIRLEKINSKHSRAFVPRYPKVKNEAWWLVLGSITSSELYALKRVS
FSGQTFTRMELPPSKINFQETKLFLVSDCYVGYEQECPIEIS
NT seq
6249 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcctttgccgcggttgacgagttctttcagggctccctacgacgttgatcag
gcgtacctccgccgcaagaggatactacggaacctaaagtcgagaagggccaacgatgaa
cctgaacttgctcggaagctgattcctcactgggacgaagcttcagctgaattgcatcaa
gcatataggcaatttgttggttctgttgttgagttggtaaatggcgaggtgtcctcagag
gaattccgggaggtggcaaagactgcttatgatctttttggtcactttcacatggataat
gatttgaccaagagtgttacccagaaaaagattgaattgcaacgacttattggttacaat
attgaagatgcaatcctacagaaaatggcttctctagctcagaggctatatgttcttcag
cattcacccaataatgctctagttgcccaggaaattggagcagatggatgtggtgacagt
accattgaatttggttctgatcttagtttccaggttccttctcgctttgttttggatgtg
ccatcggaaaatgttacaactttgtcaagcgattttctgccaacctctgcatttgatgac
aatcattacagtcacacacactttgctaatcatgattcaactactgaccaaagaactggt
agcttaaaatggctaaaagatgcttgtgatatgatagtgcaacatgatggtgcatcacag
atatctggagatgagcttgcaatggctttgtgccgtgtgctcctgtctaataaagctggc
gatgagatagctggtgatttgctggaccttgttggtgatggttcctttgaaacagttcag
gatctattattgcatcgcaaagagcttgtgaatgcaattcaacatgggttgtttatatta
aagtctgagaagatatcctcaaacaatcaacctaaaatgcctagttatggcacccaggtt
attgtacaaactgaatcagaaagacaaatggataaacttcggcgtaaggaggaaaaacgt
aataaacggttgggagaatatggaaacacactagattttccggttgaaagcttttattct
cttcttttggcaagtcagaagaaacaacctttagatgatttaattggaattggccatggg
cttaattctgttttgatcagtgctcttcctgaaggaactataagattgcataatagcggt
tatgaagaagttagaattccacccactccaactgctgctatgaaaccgcatgaaaaactg
attgaaatcaaagaactggatgattttgcgcaagctgctttccagggttacaaatccctg
aatcgcatccagagccatatttatcaaacaacttataataccaatgaaaatattctggtt
tgtgcgcctactggtgctggaaagacgaatattgctatgatatctattcttcacgagatc
aaacaacacttcagggatggttttttacacaaagatgagttcaagatagtatatgttgct
ccaatgaaggctttggctgctgaggtgacaaccacattcagtcgcaggttatccccattg
aatctggctgtaagggaacttacaggtgacatgcaattgtcaaaaaatgagctcgaggag
acccagatgatagtgactacacctgaaaaatgggacgtgattacacgcaaaagcagtgac
atgtcattgtcaatgctggtaaaactcttaatcattgatgaagtgcatctgcttaatgat
gatagaggtccagtaatagaagctctagttgcccgaacacttcgacaggttgagtcaaca
caatcaatgataagaattgtgggattatctgccaccttaccaaattacttagaggtcgga
caatttttgcacgttaatccagacaatggactgttcttttttgattcaagctatcgtcca
gttcccctagctcaacaatacattgggatcactgagaaagatttctataaaaagaatgct
ttatttaactcaatttgttatgaaaaggtattggattcaataaagcaaggtcatcaagca
atggtatttgtccattcacgtaaagacactgggaaaactgcaagaactttgaatgagtta
gcactaaattctggtgacctggagttatttgggaacgatacacatcctcaatttgctttg
atcaagaaagaggttagtaaatccagaaaccgggaacttgttgagttatttgaatctggt
ttcggcattcaccatgctggaatgcttcgttctgatagagctctcacagaacgtctattt
tctgatggattacttaaagtccttgtgtgtactgcaactttggcatggggagtgaattta
ccagcacatacagttatcatcaagggcacacaactttatgaccctaaggctggtggatgg
cgagacttgggtatgcttgatgtcatgcagatctttggtcgcgctgggagaccacagttt
gacaagagcggtgaaggcattatacttacaactcatgacaaactggcatattatttgagg
ctgcttactagtcaattacctatagaaagtcagtttattaactcaatgaaggataacttg
aatgctgaggtggtgttagggaccgtcacaaacatcaaagaggcttgtgcttggcttggt
tacacatatttgtttataagaatgaagaccaaccctctggtgtatggaataccatgggat
gaggtgattgctgatccatccttagtttccaagcaaagatctcttataaccgatgctgca
cgtgctctggacaaggcaaaaatgatgcgttttgatgagaagagtggcaacttctactgc
acagagcttggccgaatagccagccacttttatcttcagtactctagtgttgaaacttac
aatgagatgcttcggcggcatatgagtgacagtgaagtgattaacatggttgctcattct
tctgagtttgagaacattgttgttagagaggaagagcaggacgagctggaaaatttgttt
aaaatgttatgtccattagaagttaaaggtggaccaacagacaagcatggaaaaattgca
atccttattcaggtgtacatttcacgtggttcaattgagagcttctctcttatttcagat
gctgcatatattagtgctagcttgggtcgtattatgcgtgctctatttgagatttgtttg
cgcagaggctggtgtgaaatgtccgctttaatgttgcaatattgcaaggctgttgatctg
caaatttggcctcatcagcatcctcttagacagtttgagcgagacctctcagcagcagtt
ctgaaaaaacttgaagaaagaggcacagatttggaccatctatttgagatggaagagaaa
gatataagtgctttgatacgctatgctccaggaggaaagttggtcaagcagtatctgagt
tactttccaattattaacttatctgctacggttagcccaattaccagaaccgttttaaag
gttgatcttcttataactccagaatttaattggaaggatcggtttcatggtacttccaaa
cgctggtggattcttgttgaggattcagagaatgatcacatttatcattcagagcttttc
acattgactaaacgaatggcaaggcctgaaccacagaagctttcattcactgttccaata
tttgaaccacatcctccacagtactacatacgtgctgtttctgattcttggttgcatgct
gaatcactctatactgtgtccttccacaatctcacattgccagagatgcaaatatcacac
acagaacttcttgatctgaaacctcttcctgttggttcacttggcaacaagacttacaaa
aatctttataaattttctcacttcaatccgatacaaacacaggcttttcatgtcctatat
cacttggataacaatgtacttttgggagctccaacaggcagcggaaagacaatatcagca
gagttagctatgttgcatctatttgacactcagccagatatgaaggttgtttacatagct
cctctcaaagcaattgttcgagaaagaatgaatgactggaaaaggcgtcttgtttctcca
cttgggaagaaaatggttgagatgactggcgactttactcctgatcttatggcattattg
tcagctgatattattatttctactcctgaaaaatgggatggtatcagtcgtagctggaaa
aaccgcagctatgtgatgaaggtcgggctgatgatattggatgagatacatcttctagga
gctgatcgaggaccaattcttgaggttatagtttctaggatgcgatacatttcatcacag
acaacacgttcaatccgctttgtaggtctttcaacagctttagcaaatgcctgtgattta
gctagctggctgggtgttgaagagaatggtctattcaatttcaaacctagtgttcgacct
gtacctcttgaagtccacatacagggataccctgggaagttttactgtccgaggatgaac
agcatgaacaaaccagcatatgctgcaatatgcacccattcacctacaaaaccagttctt
atttttgtctcttctcgtcgccagacaagacttactgcacttgatctcattcagcttgct
gcatcagatgaaagtccaaggaaatttcttaacatgccagaagaatcacttgaaatgatt
ctctcgcaaattactgacaacaacttgagacatacattacagtttggaattggattgcat
catgctggcctgaatgatcgagacagatcattggttgaagaactcttttctaataacaag
attcagattcttgtgtgtacaagcacattagcatggggtgttaatttgcctgctcatctg
gttatcataaaggggactgaatactatgatggaaaagccaagagatatgttgatttccct
ataactgatatattacaaatgatgggccgtgctggtcgtccacaatatgatcagcatgga
aaggctgtaatccttgtccatgaaccaaagaaaagcttctataagaagtttctttatgaa
ccattccctgttgaaagtaatctgcgggaacatttgcatgaccatattaacgcagaggtt
gtttcgggtacaatcagccataaagaggatgcagttcattatctcacatggacttttcta
tttcgtagactggttttgaatccttcttactatggattggaagatactgatgccaatact
ttgaattcttttctctcaagcttagtattaaatacatttgaagttcttgaggatagtggt
tgcatcaagataaatgaaaattcggtggagcctttgatgttgggttccattgcatctcaa
tattatctaagctacagaacagtttctatgtttggagcaaacataggccctgatacttca
cttgaaacatttctgggtattctttctgcagcatctgaatttgatgagcttcctgtacgt
cataatgaggaaaatcacaataaagcactatctgaaaaggttccatacatggtggatgaa
cggcgcttggatgatccacatgtcaaagcaaatttactcttccaggcacatttctctcgc
attgaattgccaatcactgactacgttacagacttaaaatctgttcttgaccagagtata
cgtatcatccaagcaatgatagatatatctgctaatagtggatggctttcaagcacaatg
acttgtatgcatcttctacaaatgattatgcagggcttgtggtatggtaatgaatcatca
ttgtggatgttgccatgtatgaataaggatcttctaagtcacctgaaaaacattggcatc
tcttcattgcaagacctattggaacttcctaaagaaaaattcaatcagaagcttcaaaag
tttgctactgacttgtataaggatctacagcattttcctcgcatcagagtaagagtaaag
ctacaatatagagatggcaaagcatcagaacctgaagcacttaacatcagacttgagaag
ataaattctaagcattcacgagcttttgtgcctagatatcccaaggtaaaaaatgaagca
tggtggttagttcttggcagcattacatcctctgaattatatgctttgaaaagagtgagt
ttctcaggccagacttttactcgtatggagttgcctccgtctaaaatcaactttcaggaa
accaaattatttttggtatcagattgttatgtcggatatgaacaggaatgccccattgaa
ataagctaa
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integrated database retrieval system
