Zingiber officinale (ginger): 122041020
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Entry
122041020 CDS
T08725
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122041020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122041020
03400 DNA repair and recombination proteins [BR:
zof03400
]
122041020
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
122041020
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
122041020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
RTT107_BRCT_5
ECT2_BRCT0
TopBP1_BRCT0
Motif
Other DBs
NCBI-GeneID:
122041020
NCBI-ProteinID:
XP_042456475
LinkDB
All DBs
Position
2A:complement(35091417..35124278)
Genome browser
AA seq
951 aa
AA seq
DB search
MATARRGTTFAGANVFLSRSLVPPDVFDALHDALKLNGATVFLCSDPSRTAANDYHVIAS
SNHEKFENLRAKGCNLLGPQCILSCAKEYRNLPKQGYTCCLSMDGVKILASGFDKDEKIQ
IEQLVTAMGGVLHTKASQDVNFVIVKNVLAAKYKWALNILKKPIVTMSWLRQCWTEHRVV
PQEAYRILPFSGLTICVTRIPADERKEMEKLIIDNGGSYSADLTKKCSHLISDAPQGDKY
MVARRWGYIHIVTRRWIDQSIVRRACLDEALFPVQLNSVSCNDVKRSQKERRCQELSNTN
SQTVSPLMFGDVEATLSQNVSSSFSDATKVNNEGTDSAVILMKDEQKLDTCIIDDLESDD
YDLYLSDCRISLVGFSEAELSKLLNMIINGGGTRHMSLSEKLTHIIIGEPSDSEKKEVRH
LAACGVINVVKATWLEECNKTKEALPISTRHLASELIFSKDSTCYATESSTAKVENFAAI
PSVSASHHSDKFRAELFLEKRAKNNVNGSLSKIAINAEISNPCSAGKSLSQGIQKHGPYS
RNLGTQIRGPSNTFKGKHFCFSSSFPQERRAEIIEWVMEGGGTMINDQSKMNANYMIECH
GIVHAPVDCSQIVVSTHWIRSCLEDAHIQDVGSHIIYSPLRCHIPLSGFESLRFCVSQYE
EKERLLLRNLCFTLGAKFTEKLTKKVTHLLCKFATGPKYEAACRWGIQSITFDWIKECIF
QDMIISLDPFRPKPVSDEDLEAGLCTLSQYPTQSQTAQISGIPSQLVSESLESKKNTTKR
AGFSYEGLCEKDVGICRKSLRLSECRTNTDAAKKNRIPENSLISNDKTVPDFADAIEYLL
AQSPNIQDMKSPLQSGCGQGMFSSDHSIICKGNESSSSTFGVSKHWMNKTTDVMVSAASS
HEKVNGNYAFSETQTDSQVVVYEDDLSGRQKIIDRVRSQSMNLTPDGSNQL
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcgaggagagggacgacctttgctggggcgaacgtcttcctttctcgaagc
ctcgtccccccggatgtgttcgatgccctgcacgacgccctcaagctcaatggcgctacc
gtcttcctctgcagcgacccctcccgcaccgccgccaacgactaccacgtcatagcctcc
tctaaccatgagaagttcgagaatctccgcgccaagggttgcaatctgctcggaccacaa
tgcattctatcctgtgccaaagaatataggaatttgcccaaacaaggttacacctgttgc
ctttccatggatggggtcaaaattcttgcttctggatttgacaaggatgaaaagattcag
attgagcagctagttactgctatgggaggggtattgcatacaaaggcatctcaggatgtc
aattttgtcatagtaaagaatgtattggctgctaagtacaaatgggccttaaacatcctt
aagaagcctattgtcacaatgagctggttaaggcaatgctggactgagcatcgtgttgtg
ccacaagaggcttataggattcttcctttcagtggtttgactatctgcgtaacaagaatt
cctgcagatgagagaaaggagatggagaagttgattatagacaatggtggctcttattca
gctgatcttaccaaaaagtgcagtcatttaatttcagacgctcctcaaggggataagtac
atggttgcacgacggtggggttatattcatattgttacccgcagatggattgatcaatct
attgtgagaagagcttgtctagatgaagctttgttccctgttcaattaaattctgtttct
tgcaatgatgtgaaacgttctcaaaaggaacgaagatgccaggagttgagtaatacgaac
tcccaaactgtttcaccactaatgtttggggacgtagaagctacactgtcacagaatgta
tcttcttcattttctgatgctactaaggtgaataatgaggggactgattcagcagtgata
ctgatgaaggatgaacagaagttggacacttgcatcattgatgacttagagtcagatgat
tatgacctttatttgtcagattgcagaatttcacttgtgggtttctctgaggctgaacta
agcaaacttctaaatatgataattaacggtgggggcactcggcatatgtcacttagtgag
aaactgactcacataatcattggtgaaccttccgatagtgaaaagaaagaggtaagacac
ttagctgcttgtggtgtcatcaatgtggtaaaggctacttggcttgaggagtgtaataaa
acaaaggaagcactccctataagcacaagacacctagcatctgaactaattttttcaaaa
gattccacatgctatgccactgagtcatctactgccaaggtggaaaattttgctgccatt
ccttctgtatcagctagtcatcattcagataaattcagagcagagttatttttagagaag
agagccaaaaataatgtaaatggaagcctttcgaaaatagcgattaatgctgaaatatca
aacccatgttctgctggaaaaagtttgagtcagggaattcagaaacatggcccctattcc
agaaatttgggtactcaaattagaggaccatcaaacacttttaaagggaaacatttctgt
ttctcaagttcttttcctcaagaacggagggctgagattattgaatgggtcatggaagga
ggaggtaccatgataaacgatcaatctaagatgaatgcaaattatatgattgagtgtcac
ggtatcgtgcatgctcctgttgattgttctcagattgtggtttcaactcattggatacgc
tcttgtttggaggatgcacacatccaagatgttggaagccatattatctactctccattg
cggtgtcacattccgctatctggatttgaaagccttcgattttgtgtctcacagtatgaa
gagaaagaaagacttttgttaagaaacttgtgctttacgctgggggctaaatttactgag
aaattgactaaaaaagtcacacatttattgtgtaagtttgccactggaccaaaatatgag
gctgcttgtaggtggggaattcaatccatcacttttgattggattaaagagtgcattttt
caggatatgattattagtcttgatccatttcggcctaaacctgtaagtgatgaggatttg
gaagcaggtttatgcactctgagtcagtaccctacacagtcacagacagctcagatttct
gggattccatctcagctggtgagtgagtctttggagtcaaaaaagaacacaaccaaaagg
gcaggattctcatatgaaggcctttgcgaaaaggatgttggaatatgtaggaaaagttta
cgattatcggaatgtcgtacgaatactgatgcagcaaagaagaatagaatacctgaaaat
tccttgattagtaatgataaaacagttcctgattttgcagatgcgattgaatatctactg
gctcagtcaccaaatatccaggatatgaagtcacctctgcaatctggttgtggacaagga
atgttttcatctgaccattctataatttgcaaaggtaatgaaagttcaagctccactttt
ggtgtttcaaaacattggatgaacaagactactgatgtcatggtttctgctgcttcgtct
catgaaaaagttaatggcaattatgcttttagtgagacacaaacagattcacaggtcgtt
gtgtatgaagatgatctatcaggaaggcagaagataatcgacagagttcgatcacagagt
atgaatttgactccggatggatcaaatcaattgtaa
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