Zingiber officinale (ginger): 122041039
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Entry
122041039 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
zof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122041039
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
122041039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122041039
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122041039
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122041039
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122041039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
Beta-prop_DCAF4
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
EIF3I
WD40_MABP1-WDR62_1st
zf-C3HC4
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
zf-RING_2
WD40_RFWD3
zf-C3HC4_3
WD40_like
Beta-prop_SCAP
zf-RING_UBOX
zf-RING_5
Beta-prop_DCAF12
zf-C3HC4_4
Beta-prop_IFT140_1st
zf-Nse
Beta-prop_IFT122_2nd
DUF1664
Motif
Other DBs
NCBI-GeneID:
122041039
NCBI-ProteinID:
XP_042456506
LinkDB
All DBs
Position
2A:36890511..36925226
Genome browser
AA seq
696 aa
AA seq
DB search
MGSSSAGALVPSVSKTEEMGASVAPPAVSSSETTDVAGTPAAPEADKVPDGVRDPAPAAS
EEEAERDKDLRCPICMGVIKDAFLTACGHSFCYMCIVTHLNNKSDCPCCGIYLTKNQLYP
NFLLNKLLKKHSACQIAKTASPVEHLRLALQQGCEMSVKELDGLLGLLTEKRRKMEQQEA
EMNMQILLDFLQCLKKKKLEELNEVQTDLQYVKEDINAVEKHRTELYCARERFSVKLRSL
DDPIATKLWSPSANQHNSILVSNARSSLVGTCSGNLQAKSNDVKVQLSHQEYQRKDAFSG
SETSPLIQSGRIIARKRRIQAQFNELQECYLQKRRLRANQIHGQEEKKVNVKVREGYHAG
LDDFQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDEFFATAGVSKRIKVFE
FSTVVNEPSDVNCPVVELATRSKLSCLSWNKYSKNIIASSDYEGNVTVWDVNTRQSVMEY
EEHEKRAWSVDFSRMEPTMLVSGSDDCKVKVWCTKQEASVINIDMKANICCVKYNPGSSF
HVAIGSADHHIHYFDLRNTSTPLRVFKGHWKAVSYVKFLSTNELASASTDSTLRLWDVKD
TCPVRTFRGHTNEKNFVGLTVNNEYIACGSETNEVFVYHKAISKPAAWHKFGSSELDDAE
DDVGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgggcagttcctctgctggagcgctggtgccttccgtatcgaagacggaggagatgggg
gcttcggtcgcaccccccgcagtctcctcctcggagaccacggacgtcgccggaacgcca
gccgcgccggaggcagataaggtaccagacggagttcgggatccagcgcccgcggcgtca
gaggaggaagctgagcgcgacaaggatcttcgctgccctatctgcatgggggtcatcaag
gacgccttcctgacggcctgcggccacagcttctgctacatgtgcattgtcacccacctc
aacaataagagcgattgcccctgctgcggaatttacctcaccaagaatcaactctaccca
aatttcctcctcaataagcttttgaaaaagcattcagcctgtcaaattgcaaaaacagca
tccccagttgagcatcttcgtctagcattgcaacagggatgtgagatgtcagttaaagag
ttagatggtctgctgggtctgctcactgagaaaaggcggaaaatggaacaacaagaggcc
gaaatgaatatgcaaattttgcttgactttttacagtgtctaaagaagaaaaagttagaa
gagctaaatgaggtacaaactgatttacagtacgtcaaagaagatataaatgccgttgag
aagcaccgaacagaactttactgtgcaagagaaagattctctgtcaaattgcgcagtttg
gatgatccgattgcaacaaaattgtggtctcccagtgctaaccagcataatagtatactt
gtctcaaatgctcgaagctctcttgtgggaacatgctctggaaatttacaagcgaagagt
aatgatgtaaaagttcaactgagccatcaagagtaccaaaggaaagatgcttttagtggt
tctgaaacgagtcctctgattcaatcaggaagaatcatagcaagaaagagaagaattcaa
gctcagtttaatgagcttcaagaatgttacttacaaaagaggcggctcagagcgaaccaa
atacatggtcaagaagaaaaaaaagtaaatgttaaagtgagagaaggataccatgccgga
ctagatgattttcaatctgtgctaactacatttacaagatacagtcggttacgtgttatt
gcggaacttagacatggagatttatttcattcagcaaatattgtgtcaagcatagagttt
gatcgtgatgatgaattttttgctactgctggtgtttcgaagcgcattaaagtgtttgaa
ttctcaacagttgttaatgaaccatcagatgtgaattgccctgttgtagaattggcaaca
cgatctaaacttagttgcctaagttggaacaagtactcaaaaaacatcattgcaagtagt
gattatgaagggaatgtaactgtatgggatgtaaatactcgccagagtgtgatggaatat
gaagaacatgaaaaacgggcatggagtgttgatttttctaggatggaaccaacaatgcta
gtttctggtagtgatgattgtaaggtgaaggtgtggtgcacaaagcaagaagccagtgtt
atcaacattgacatgaaagcaaatatttgttgtgttaaatacaatccagggtcaagtttt
catgttgcgattggttctgctgaccatcacattcactattttgatctgagaaatactagt
actccactacgtgttttcaaggggcactggaaagcagtatcttatgtaaaattcttgtcc
accaatgaacttgcatctgcatcaacagacagtacattgcgactttgggatgtaaaagac
acatgcccagtgcggactttcagagggcacacgaatgagaaaaattttgtgggtttaaca
gtcaacaatgagtacattgcttgtggtagtgagacaaatgaagtatttgtgtaccataag
gcaatctcgaaaccagctgcatggcataaatttggatcttcagaacttgatgatgcagaa
gatgacgttggttcatattttattagtgctgtttgttggaagagtgacagtccgacaatg
ttgacagccaatagccagggaacaatcaaagttcttgtacttgcagcatag
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