KEGG   Zingiber officinale (ginger): 122041057
Entry
122041057         CDS       T08725                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03082  ATP-dependent chromatin remodeling
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122041057
   03083 Polycomb repressive complex
    122041057
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zof03036]
    122041057
Enzymes [BR:zof01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     122041057
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     122041057
   HDAC complexes
    Sin3A-HDAC complex
     122041057
    BRAF-HDAC complex
     122041057
    REST complex
     122041057
    SHIP complex
     122041057
    MiDAC complex
     122041057
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     122041057
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122041057
  Chromatin remodeling factors
   NuRD complex
    122041057
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 122041057
NCBI-ProteinID: XP_042456533
LinkDB
Position
2A:41508602..41522239
AA seq 431 aa
MPSKERISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYGLYKKMEIYRPHKAYPVEL
AQFHSTDYVEFLHRISPNTQNLFADELARYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NHQLCDIAINWAGGLHHAKKSSASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDIFFPGTGDVKDIGEKEGKYYAINVPLKDGIDDASFTRLFKT
IISKVVETYLPGVIVLQCGADSLAGDRLGCFNLSIEGHSECVRFVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNDYIKYFAPDFTLKIPNGNMENLNSKSYLGTIR
FQVLECLRSIQHAPGVQMQEIPPDFYIPDIDEDEQNPDERVNQHAQDKQIQRDDEYYDGD
NDNDHNMDDGP
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgccgtccaaagaacggatttcctacttctacgatggggatgttgggaatgtttatttt
gggcctaatcacccaatgaaaccacaccgcctatgtatgacccaccatcttgtgctctca
tatggtctttacaagaagatggagatatatcgaccacacaaggcatacccagtggagctg
gcacaatttcattcaacagattacgtggaatttttgcaccgaataagtcctaacacacaa
aatttgtttgctgacgagttagctagatataatcttggagaagattgccctgtctttgaa
aatcttttcgaattctgtcaaatatatgctggtggcacgattgatgctgcaagaaggcta
aaccatcagctatgtgatattgctataaattgggctggtggtttacatcatgcaaaaaag
tcttctgcatcaggcttctgctatattaatgacttggttttggggatcctggaacttctt
aaatatcatgctcgagttctttatattgatatagatgttcatcatggcgacggcgtcgaa
gaagctttctatttcacagacagggtaatgaccgtcagtttccataaatatggtgacatc
ttctttccaggaaccggtgatgttaaagatataggtgaaaaggaaggaaaatattatgcc
attaatgtcccactcaaggatggaatagatgatgctagttttactcggctttttaaaacg
attatttccaaggttgttgaaacatatctgccaggtgttattgttctccaatgtggagct
gattcacttgctggtgatcgcttgggctgttttaacctctccattgaaggacattcagaa
tgtgtaagatttgtgaagaaattcaatctgccactgttggttactggtggtggaggatac
actaaagaaaatgttgctcgctgctggactgtcgaaactggtgttttgctagatacagag
ctcccaaatgaaatcccagataatgattatatcaagtattttgctccagacttcactttg
aaaattcccaatggcaacatggagaacttgaatagtaagtcatatcttggcacaatcagg
tttcaggttctagaatgtttgcggtctatacaacatgctcctggtgtccaaatgcaagag
attcccccagatttttatatccctgatatcgatgaggatgagcaaaatcctgatgaaaga
gtaaaccagcatgcacaggataagcaaattcagcgagatgatgaatattacgatggcgac
aatgataatgatcataacatggacgatggcccttga

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