Zingiber officinale (ginger): 122041083
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Entry
122041083 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP54-like isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122041083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122041083
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122041083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
DUF3287
Motif
Other DBs
NCBI-GeneID:
122041083
NCBI-ProteinID:
XP_042456585
LinkDB
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Position
2A:complement(43962506..43991511)
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AA seq
408 aa
AA seq
DB search
MFGTPSASSTPAFGTPSSAPAFGSSPSFGTPSSSPAFGAPSSAMAFGAPSSAPVFGTASS
TPSFITPTSSLPFGTPPSTPAFGTPSSMPAFGAPLSAPAPSPLFPQQSQQQHFTIQPASL
PFGNPQITTQMAPVAPVRLSLADRDIHAIIDAYKDEPGNPKYSFRHLLLSVTDHAARVKP
FGASDISWAEAMRKLEGMDSLDRDRLWPQLVQGFKDLSDRLKLQDEVIISDAERLKMTQA
NVKLVSLNNFVLQRHFQADSFQWIQRLKQKEQTLLRRLLRVMRIVEALESKGYRIPLMKG
EAELSEKLAAITRQLKGPGTELSRRVHNLLSITRMRANSGDFRDSIHILGSAKLQEQSLC
DLQEALQQENEAIARLGNVLKRDVRDLEIIMSEGTDMLEDGRQILKIQ
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgttcgggaccccgtcggcttcgtcaacgccggcctttggcacgccttcttccgctcct
gccttcggttcttctccgtcttttggcacgccttcttcgtctccggcttttggagcgcct
tcttccgctatggctttcggcgcgccttcttccgctccggtcttcggcaccgcttcgtcc
actccatccttcatcactcctacctcaagtctgccgttcggtacacctccttccacacct
gcctttggtacgccttcatccatgcccgcatttggagcgcctttgtcggcgccagcccct
tcccccctttttccacagcagtcgcagcagcagcattttacaatccagccggcctccctc
ccttttggaaatcctcagataacgactcaaatggctcccgtcgctcccgtccggctttcc
ctcgctgatcgagacatccacgcaatcatagatgcttacaaggatgagccggggaatcct
aagtactcgtttaggcatttgctgttaagcgtcacagatcatgccgcacgggtgaaaccg
tttggtgcatctgatatctcctgggcagaggcaatgaggaagctggagggaatggacagt
ttagatagagacaggttgtggcctcaacttgtacagggctttaaagatctatccgatcgc
ctcaagcttcaggatgaagttattatttcggatgctgagaggctgaaaatgacacaagct
aatgtcaagctagttagtctcaacaattttgtgctccaaagacattttcaagcagacagt
tttcagtggattcaaagattgaaacagaaagaacaaacacttctgaggcgtcttttgagg
gttatgaggatagtggaagctctggagagtaagggttacaggatacctctgatgaaaggt
gaagctgaactgtctgagaagttggctgcaatcacaagacaactgaaaggtcctggaaca
gagttatcgagaagggtacataatcttctttctataacccgcatgcgtgctaactctggt
gatttcagagattccatccatattctagggtcagcaaagttgcaggagcaaagcctttgt
gacttgcaagaggcacttcaacaagaaaatgaagcgattgctaggttgggcaatgtcttg
aagcgagatgtgagagatttggagatcatcatgtctgagggcacggatatgttggaagat
ggtaggcagattttgaagatccaatag
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