Zingiber officinale (ginger): 122041120
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Entry
122041120 CDS
T08725
Name
(RefSeq) probable ubiquitin conjugation factor E4 isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122041120
04120 Ubiquitin mediated proteolysis
122041120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122041120
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122041120
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
U-box type E3
122041120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
VRP3
Motif
Other DBs
NCBI-GeneID:
122041120
NCBI-ProteinID:
XP_042456643
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All DBs
Position
2A:complement(53583089..53599021)
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AA seq
1012 aa
AA seq
DB search
MAAKKPQRSLQEIEDILLRKIFLVALQEPAQNDPRIIFLELTAAEILSEGKFLALSRDTM
ERVLIDRLSGDFPSAEPPFRYLVGCYRRACDELKKVASMKDASVRSEIESTIKQARKMVI
SYCRIQTGNPDMFMMSGQSGFSATSDLMLMIFSEVSTPMDGFGGDSLGSGFDCPPGFIDE
FFRDGDDDSLELVLKDLFEKLKQSVGRVSALGNFQQPLRALLLLVKYPSCAKALVNHPRW
IPKETYLLIGEGRVIEIESILGAFLHVSALPDFKEFKSTPDVGQQCFSEVSNRRPADLLS
SFTTIKTVMNILYDGLGEVFLILLKNIDTRERVLEYLAEVIKKNSARSRMQVDPLSSASS
GMFVNLSSVMIRLCEPFLDGAVTKRDKINPKYLFHNTRLDFTQLTALCASSEEVSAWLEN
ESSWKNNHDMDAQEGTSTVNDSDNSILKLKPLQSYARKEKYSFICECFFMTARVLNLGLM
KAISDFKHLAQTLGRYEEELSTFKAMREQGASPQLEADIKRLEKAIEILSQDKLCYEAQL
LRDGTLLQRALTFCRLVIIWLVDLVGGFKMPLPSSCPMEFACVPEHFVDDAMDLLILTSR
IPKALEGFVLDDFLNFIIMFMASPSYVKNPYLRAKMVEVLNCWIPQRSGVSATAALFEGH
QLSLDYLVRNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWNVPSHRNAWRQIARE
EEKGVYLNFLNFLINDSIYLLDESLNIILELKEIEAEMTNSAEWERRPAQEREERTRLFH
SRENIVRFDMKLANEDVGMLAFTSEQIPAPFLLPEMVERVASMLNYFLLQLAGPQRRSLN
VKDPEKYEFRPRQLLKQIAEIYVHIARGDKENVFPAAISKDGRSYNEKLFTSTADILWKI
GEDGKIIEEFVQLGLKAKVAASEAMDAEAVLGDIPEEFLDPIQYTLMSDPVILPSSRISV
DRPVIQRHLLSDTTDPFNRSHLTQDMLIPNAELKQRIEEFIRSQRRRTPQNE
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaagaagccccagcgatctctacaggagatcgaggacatcctcctccgtaag
atcttcctcgtcgctcttcaagagcccgctcagaatgaccctagaatcatctttctggag
ctcacggcagccgagatccttagcgagggcaaatttctcgccctttcccgagatacgatg
gagagggtcctcatcgaccggctctctggagacttcccctccgccgaacctcccttccgc
tatttggtaggctgctaccgccgcgcctgtgatgagttgaaaaaggttgcttcgatgaag
gacgcctctgttagatcggagattgagtccaccattaagcaagcgcggaagatggtcatc
tcttattgtaggatccaaacagggaacccggatatgtttatgatgtctgggcagtccggt
ttttcagcgacgtctgatctgatgttgatgatcttctcggaggtctcaaccccgatggat
gggtttggaggtgatagtttgggcagtggattcgattgccctccaggttttattgacgaa
ttcttcagggatggcgacgatgacagtttggaactggttttgaaggatttgtttgagaaa
ctgaagcagagtgttggcagagtctcagcattagggaacttccagcagccgctgagagca
ctgctgctattggttaaatatcctagttgtgccaaagctttggtgaatcacccacgatgg
atacctaaagagacttacttgttgattggggaagggagggtaattgagatagaaagcatt
ttaggagcttttctccatgtcagtgcattgcctgattttaaggaatttaagagtacacca
gatgtcggacaacaatgtttctcggaagtgtctaatcgtcggcctgctgatttgttgtca
tccttcacaacaatcaagacagtcatgaatattttgtatgatggtcttggggaggtgttc
ctcatcttactaaagaatatagatacacgagaaagagttttagaatatcttgcagaagtg
attaagaaaaattcagcaaggtctcgcatgcaggtggatccattgtcatctgccagctct
ggcatgtttgtgaaccttagttccgtaatgattcgcctttgtgaaccttttctggatggt
gctgtaacaaagagagacaaaattaatccaaaatatttatttcataatacccgtttagat
ttcacacaactgacagccctgtgtgcatcatctgaagaagtatcagcatggttagagaat
gaaagttcctggaagaataatcatgatatggatgctcaagaaggcacaagcactgtcaat
gatagtgataattccattctcaagctgaaaccattgcagagttatgcaagaaaggagaaa
tattcttttatctgcgagtgtttctttatgactgcacgggtacttaacttgggactgatg
aaagcaatatcagacttcaaacaccttgctcagacattgggaaggtatgaagaagaatta
tctaccttcaaagccatgagggaacaaggagcttctccacaacttgaggctgacataaag
cgtctagagaaagcaatcgagattttgtcacaggacaaactatgttatgaagctcaacta
ttacgagatggtacactgctacaacgggcattgacattctgcagattggttattatttgg
ttggttgatcttgtcggtgggtttaagatgcctctgccatcatcctgccccatggaattt
gcatgtgttccagaacattttgttgatgatgccatggacttacttattttgacttctaga
attccaaaggctttggaagggtttgtcttggatgatttcttgaatttcataattatgttc
atggcaagtccttcttatgttaagaacccttatttgagagctaaaatggttgaagtattg
aattgttggataccacaaagaagtggggtttctgctactgctgctctatttgaaggacac
cagttgtctcttgattatctagttagaaatcttcttaaactttatgtggatattgaattc
actggttcacacacgcagttttttgataaattcaatattcgtcacaatattgctgaactc
ttagagtatctgtggaatgttcctagccatcgcaatgcatggagacagattgcaagggaa
gaggagaagggtgtctatttgaactttctgaatttcctaatcaatgatagcatttatctt
cttgatgagagtttaaacataatccttgaacttaaagaaatagaagctgaaatgacaaat
tctgctgaatgggaacggaggccagcacaggagagggaagagagaacgaggctttttcat
tcacgagaaaatattgtccgatttgatatgaagttggcaaatgaagatgttgggatgctt
gcattcacatctgaacaaatacccgcacccttcctgcttccggaaatggttgaaagggtg
gctagcatgctaaattattttctcttacaacttgctggtcctcaacggaggtctctgaat
gtaaaagatcctgaaaaatatgaatttaggccaagacaattgctaaaacaaattgccgag
atttacgttcatattgcaagaggtgacaaagagaatgtgttccctgctgcaatctcaaag
gatggacggtcatataatgagaagctgtttacttcgacagccgatattctgtggaaaatt
ggtgaagatggtaagataattgaggagtttgttcagcttggtctcaaggccaaagtagct
gcttctgaagcaatggatgctgaggctgttcttggagacatacctgaagaatttcttgac
ccaattcagtatacactgatgagtgatcctgtcattctaccgtcatcaagaatatcagta
gatcggccagttatccaaaggcacttgcttagtgacactaccgatcctttcaaccgttct
catctcactcaagacatgctaatacctaacgccgagctgaaacaaagaattgaagagttc
atcagatcccagaggagacgaaccccacagaatgagtga
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