Zingiber officinale (ginger): 122041266
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Entry
122041266 CDS
T08725
Name
(RefSeq) oligouridylate-binding protein 1-like isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122041266
03041 Spliceosome [BR:
zof03041
]
122041266
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
122041266
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122041266
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_PARP14_3
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
122041266
NCBI-ProteinID:
XP_042456833
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Position
2A:77450608..77457633
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AA seq
432 aa
AA seq
DB search
MQQQQQQLRFKQQQQALMQHALLLQQQQQPQQQSLYPHPGLLAGPQIEPILSGNLPPRFD
PSTCRSVYVGNVHLQVTEPLLQEVFQSTGLVEGCKLIRKEKSSFGFVDYFDRRSAALAIM
TLNGRQLFGQPIKVNWAYASGQREDTSGQYNIFVGDLSPEITDATLFACFSVYPSCSDAR
VMWDQKTGRSRGFGFVSFRNQQDAQGAINDLTGKWLGSRQIRCNWATKGANANEEKQSSD
SKSVLELTNGSTAEDVQENANDDGPENNPQYTTVYVGNLAHEVTQVDLHRYFHALGAGAI
EDVRIQREKGFGFVRYSNHSEAALSIQLGNGRVFCGKPIKCSWGSKPTPPGIASTPLPPP
AAAPFPGLSTADLFGYDRVLALSKLGANQALMQAPGQLPMKQAAMGLGAGASQALYDGGY
QNAGAAQQLMYY
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcagcagcagcagctcaggttcaagcagcagcagcaggccttgatgcagcat
gcactcctcctccagcagcagcagcagccacagcagcagtcgctctatcctcacccgggc
ctcttggccggccctcagatagagcctatcctaagtggaaatctacctcctagatttgac
ccaagcacatgccggagtgtctatgtaggcaatgttcatcttcaagttactgaacccctt
cttcaagaagtttttcaaagtactggtttggtcgagggatgtaagcttattaggaaagag
aagtcatcctttggctttgttgattattttgatcgccgttctgctgctcttgcaattatg
acacttaatgggaggcagctgtttggtcaacctattaaggttaactgggcgtatgccagt
gggcaaagagaggacacatcagggcagtataacatatttgttggtgatcttagccctgag
attacagatgctacattgtttgcatgcttctctgtatatccaagctgctcggatgcaagg
gtcatgtgggaccaaaaaactggtcgttcaagagggtttggttttgtttctttccggaac
caacaggatgctcaaggtgccataaatgacttgactggcaagtggcttggcagtcggcaa
attcgttgtaactgggctacaaagggagctaatgctaatgaggagaaacaaagttcagat
tcaaaaagtgtcctggaactaacaaatggatctactgcagaagatgtacaagaaaatgca
aatgatgatggtccagagaataacccacaatataccactgtatatgttggtaatcttgct
catgaggttactcaggttgatctccaccgttatttccatgctttaggtgctggagcgatt
gaggatgtccgcatacaacgtgaaaaagggtttggtttcgtgagatacagtaaccattct
gaagctgctttgtctatccaactgggaaatggccgagttttctgtggaaagccaattaag
tgttcatggggtagcaaaccaactccacctgggatagcctccaccccgctccccccacct
gcagccgctccattccctggactttccacagctgacctctttggttatgatcgcgtcctt
gcattaagcaagctgggcgcgaaccaggcactgatgcaagctccgggtcagcttccaatg
aagcaggctgccatgggactgggtgcaggcgcgagccaggctctctatgatggcgggtac
caaaatgctggcgcagcccagcagctgatgtactactag
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