Zingiber officinale (ginger): 122041275
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Entry
122041275 CDS
T08725
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like
KO
K14948
polypyrimidine tract-binding protein 2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122041275
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122041275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
RBD_AKAP-17A
RRM_10
DUF4523
DUF3153
Motif
Other DBs
NCBI-GeneID:
122041275
NCBI-ProteinID:
XP_042456843
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All DBs
Position
2A:77986787..77994996
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AA seq
436 aa
AA seq
DB search
MSSSSGQQQFRYTQTPSKVLHIRNLPWECTEEELIELCKPFGKIVNTKCNVGANRNQSFV
EFVDLNQAISMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKSTGEVAGNVLLVTIEGV
EAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAATASEARNSLDGRSIPKYL
LPEHITSCHLRITFSAHTDLNIKFQSHRSRDYTNPYLPVNPSAIDGTLQPTIGPDGKIKE
HESNVLLASIENMQYAVTVDVLHTVFSAFGTVHKIAIFEKNGGTQALIQYPDMTTAAVAK
EALEGHCIYDGGYCKLHLSYSRHTDLNVKAYSDKSRDYTITDTGILTTQASSVPTAPSSW
QTNPQVAGTFVSSAGMQASVPVGQPFVPLGAPYLTSSVRPAASVSYLQASQQVAQYGMHP
SPAGAAPNVGQPPRYF
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcgtcggggcagcagcagttccggtacacgcagacgccgtcgaaggtgctt
cacatcagaaacctaccatgggaatgcacggaggaggagctgatcgaactctgcaagccg
ttcggaaaaatcgtcaacacaaaatgtaacgtgggggccaaccgcaaccagtcttttgtc
gaatttgtggaccttaatcaggctatctctatgatttcatattatgcctcttcatctgaa
cctgcacaagttcgtggcaaaacagtttacctccaatattcgaacaggcaagaaattgtg
aacaataagtccactggagaggttgctggaaatgttttgcttgtaaccatagagggagtt
gaagctggtgatgtcagtatagacgttattcatttggtcttttctgcttttggttttgtc
cacaaaattgccacgtttgagaaggcagctggttttcaggctttgatccagtacactgat
gcagcaactgcttcagaagctagaaattcattggatggaagaagcatcccaaagtacctg
cttccagagcatattacatcttgccaccttcgaattactttttcagctcatacagatttg
aatatcaagtttcagtctcaccgcagcagagattacactaatccttaccttcctgtcaat
ccttcggcgatcgatggtactttacagcctacaattggtcctgatggaaaaataaaggaa
catgagagcaatgtgctacttgcgtccatagagaatatgcaatatgctgtcacagttgat
gttcttcacacagtgttctcagcatttggaactgtacataaaattgcaatatttgagaag
aatggtggaactcaggctttaatccagtacccagacatgacgactgcagcagttgccaaa
gaggctctcgaggggcattgcatttatgatggcggctattgtaagcttcatctgtcatac
tctcgtcacaccgacctcaatgtaaaggcctacagtgacaagagcagagattacacaatc
accgacaccggaatccttacgactcaagcttcctctgtaccgactgcgcccagtagttgg
caaacgaaccctcaagtagcagggacttttgttagcagtgccggcatgcaagcatcagtt
ccagtgggccagccttttgttcctcttggtgccccatatctgacctcatctgttcgcccg
gcagcttcagttagttatcttcaggcttcacagcaggtggctcaatatggaatgcaccca
agtcctgctggcgctgcaccaaacgtcggacagccgcctagatatttctaa
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