Zingiber officinale (ginger): 122041384
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Entry
122041384 CDS
T08725
Name
(RefSeq) E3 ubiquitin protein ligase RIN2-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122041384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122041384
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
122041384
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122041384
Multi subunit type E3
ERAD complex
122041384
LMBR1L-GP78-UBAC2 complex
122041384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
CUE
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_2
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-C3HC4_4
PHD
E3_UbLigase_EDD
zf-HC5HC2H
RINGv
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
122041384
NCBI-ProteinID:
XP_042456973
LinkDB
All DBs
Position
2A:complement(84286960..84295554)
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AA seq
582 aa
AA seq
DB search
MAVNYLYLSAFSTTAGLVALQWWTGFSLDGMTRDGLIGGEGGGDPSESAGSDLVLLLSSR
VTVALLVNFVINVYILAVLLLKLLFFVQLTASETRKVLERFINYIMYKGAFLPLVVPLKI
SHVIFWSSWLIFLCSLKIFQSVARDRLERLNASPSMTPWKYFRVYSSLLLVLFADFIWMK
LCMVLCSSYSSSLLMLLFFEPLSVAFDTLQVIMIHGFQLAEIYQRHSSGNASLNFDIQKT
TAGSLSEWKGLILRHCGFILDMMTLVMSLGHYLMTWWLHGMAFHLVDIALFLNLRALVSA
VATRIKAYLKLRKALTSLDGVLPDATYEELCAYNDKCAICREPMARAKKLSCNHLFHLVC
LRSWLDQGLTEGYSCPTCRRPLFVPNAQDGSRSAAATGTDGNQLVEHLNLGLNQPRVPVH
ALPLGASPNQRQNTSDTLWRSAAFNPNLTPPWVNQGMDGASSSSSVRSVGFEGVQMMMRQ
LTSVSDNFAHSSLDNAAWNLWPSQHPASPLVPASSSIRPTRNTTDLRIRRAPSSPVNNSM
PELLAMVDRVREVLPHIPDELIVQDLLRTNNINITVNNLLVQ
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcaattatctctacctgtcagccttcagcacgacggccggactcgtcgcgctg
cagtggtggacgggtttctctcttgatgggatgacaagggatgggttgattggtggggaa
ggcggtggcgatccatcggagagtgcagggagcgatctggtgctgctacttagttcccgt
gtcaccgtggctctacttgtgaatttcgtgatcaatgtttatatcctggcagtgttactg
ctcaagttgctattctttgtccaattgactgcatcagagactagaaaagttttggaacga
tttattaactacattatgtacaagggagcctttcttccattggttgtaccactgaagatt
tctcatgtgatcttttggtcaagttggttgatctttctttgttcccttaagatttttcaa
tcagttgcaagagatcggcttgaaagattaaatgcatctccttccatgacaccatggaag
tactttcgagtttattcttccctgttgctggttctttttgcagacttcatttggatgaag
ctgtgtatggtgctgtgcagttcatatagttctagcttgcttatgctgttgttctttgag
cctttgagtgtagcttttgatacattacaggtcattatgatacatggatttcagttagct
gagatttatcaacggcattccagtggaaatgcgagcttaaactttgatattcagaaaaca
acagcaggttctctttctgaatggaagggacttatcttaagacattgtggtttcattcta
gatatgatgactttggtaatgtcattaggccattacttaatgacatggtggcttcatggc
atggcatttcatctagtagatattgctctctttcttaatttgcgtgctcttgtaagtgca
gttgcaacgcgaattaaagcttatcttaagttaaggaaggccctgacttcccttgatgga
gtacttcctgatgctacatatgaggaactttgtgcttataacgataaatgtgcaatatgc
agagaaccaatggccagggcaaaaaagctctcctgcaatcatctattccatcttgtgtgt
ttaagatcttggctggaccagggtttgactgagggctactcttgccctacatgtcggagg
ccattatttgttcctaatgctcaagatggctcaaggtctgctgctgcaactggtacagat
ggcaaccaacttgttgaacatcttaatttaggattgaaccaaccaagagttcctgttcat
gcactacctttaggagcatctccaaaccagcgacagaatacttctgatacactttggagg
agtgccgccttcaaccccaacttgacacctccatgggtgaaccaagggatggatggtgct
agttcatctagttcggtcagatctgttggatttgaaggtgttcagatgatgatgaggcag
ctcacatcagttagcgacaactttgctcatagttcactagacaatgctgcgtggaatctg
tggccttctcagcaccctgcatctcctcttgttcctgcatcttcctccattagacccacc
agaaacacaactgatttacgaattcggagggctccatcatcacccgtcaacaatagcatg
ccagagttacttgcaatggtagatagagttcgtgaggttttaccacacattcccgatgag
ctaattgtacaggatttgctgagaaccaacaacatcaatataaccgtgaataatcttctt
gtacaataa
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