Zingiber officinale (ginger): 122041897
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Entry
122041897 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122041897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122041897
03009 Ribosome biogenesis [BR:
zof03009
]
122041897
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122041897
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
122041897
Complex B
122041897
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122041897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RAM
Motif
Other DBs
NCBI-GeneID:
122041897
NCBI-ProteinID:
XP_042457692
LinkDB
All DBs
Position
2A:108820988..108834615
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AA seq
681 aa
AA seq
DB search
MNPFDARYADLNSYRERRSNFARPMMPPGSVPLGGGMGSGPILPPSGSSFAVTGGGSIFP
APPITAHFQSGGGNGRPADIERFRDERFEFGGGGGGGRRGGTGRGGDRGGWAGSGARGFD
SGRGGGVTGSGFDSGRGGGVTGSGFHSGRGGSVNGRGHGFGSGGKGRGLDGGRGSAGGRG
SFGGGRGGSRDGFGSRNFTKSTNDFDRVSLPIQNFHNIIPFEKNLYLEGPSVQAMSEQEA
IFYRRSRQITTEGHDIPKPIRFFHEANFPVNILQAIEKCGFSEPTPIQAQGWPMALKGRD
LIGIAETGSGKTLAYLLPALIHVNSQPRLAYGDGPIVLVLAPTRELAVQIQEESVKFGSH
VNVRSTCIYGGAPKGPQIRDLKKGVEIVIATPGRLIDMLEACHTNLQRVTYLVLDEADRM
LDMGFEPQIRKIISQIRPDRQTLYWSATWPREVEALARQFLQNPYKIIIGSPDLKANQSI
NQIVEVILEHEKYPRLIKLLSELMDGSKILVFLETKKGCDRVTRQLRMDGWPALSIHGDK
DQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPVNLEDYVHRIGRTGRA
GAKGMAFTFFTQASARFAKELVKILQDAGQIVSPALASLARSSSGVTGGSGRNFRSRGRG
FGNRPLVSGSNSIPLSGRRAW
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgttcgacgctcgctacgccgatctcaattcctatcgggagagacggagcaat
tttgcgcggccgatgatgcctcctggatcggttccgctgggcggtggtatgggatctggc
cccatcttacccccatcggggtctagctttgcagttaccggaggcggaagtatcttccct
gctcctcccatcaccgctcattttcaatccgggggcggtaacggaaggcctgctgacatt
gaacgctttcgggatgagaggtttgaatttgggggaggaggaggcggtggacgtcgtggt
gggacagggcgtggtggtgatcgtggcggttgggctgggagtggtgcgaggggttttgac
tcggggagaggtggtggtgtgactgggagcggttttgactcggggagaggtggtggcgtg
actgggagcggttttcactcggggagaggtggtagcgtaaacgggagaggccatggtttt
ggcagtggtgggaagggaaggggacttgatggtggccgcggcagtgctggaggaagggga
agctttggaggaggtcgtgggggtagtagagatggttttggtagtaggaacttcaccaag
tcaacaaatgattttgatagagtttccctcccgatacagaatttccacaacatcatccca
tttgagaagaacttatatttggagggcccttcggtgcaggcaatgtcagagcaggaggct
atcttctaccgaagaagccgccagattacgacagaaggccatgatattccaaagcctatc
aggttctttcatgaggcgaactttcctgtcaacattctccaagctatagagaaatgtggc
ttcagtgaaccaacacctattcaagcccaagggtggcctatggctttgaagggcagggac
ttgattggtattgcggaaactggttcgggaaagacactagcatatttgcttccagcactg
atccatgttaattctcaacctcgtttagcttatggcgatggtccaattgtcttggtcctt
gcacctacaagagaattagctgttcagatacaagaagagtcagtgaaatttggatcacat
gtaaatgttagaagcacatgcatctatggtggggcgcctaaaggaccacagattcgtgat
ctcaagaaaggtgttgaaattgtcattgcgacacctggtcgactaattgatatgttggaa
gcatgccatacaaaccttcaaagagtaacatacctcgtattggatgaagcagatcgcatg
ttggatatggggtttgaacctcagataaggaaaattatctctcaaattcggccagaccgg
caaacattatattggagtgccacatggccaagggaagtagaggctttagcccgacaattt
ttacaaaacccttataagataataataggatctcctgatctgaaagctaatcagtcaata
aaccaaattgttgaagtcattttggaacatgagaagtatccaaggctgattaagcttctg
agtgaattaatggacgggagcaagatcctggtttttcttgagacgaaaaaaggctgtgac
cgagtcactaggcagctccggatggatggatggcctgcactatctattcatggtgataaa
gatcaagctgaaagagattgggttcttgcagagtttaaaagtggcagaagtcctataatg
actgccactgatgtagctgctcgtggccttgatgttaaggatataaaatgtgtcatcaat
tatgacttcccagtgaatcttgaggactatgttcataggattggacgcactggtagagcc
ggtgccaaagggatggcatttaccttcttcactcaggcaagtgcaagatttgcaaaggag
cttgttaaaatcctacaggatgctggtcagattgtcagtccagcactggcctccttggcc
cggtcaagcagtggtgtcactggaggttctggacggaatttccggtcaagaggacgtggt
tttggaaatcgccctctcgtgtctgggtctaattccatcccattaagtgggcgaagggct
tggtaa
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