Zingiber officinale (ginger): 122042416
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Entry
122042416 CDS
T08725
Name
(RefSeq) uncharacterized protein LOC122042416 isoform X1
KO
K06100
symplekin
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122042416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122042416
03019 Messenger RNA biogenesis [BR:
zof03019
]
122042416
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122042416
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122042416
U7-dependent histone pre-mRNA processing factors
122042416
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
122042416
NCBI-ProteinID:
XP_042458463
LinkDB
All DBs
Position
2A:137438306..137502856
Genome browser
AA seq
1292 aa
AA seq
DB search
MAEGFGVSADGRDASPKSDVAVFRDSLRALELLKDLGSKVSEKLIALMPNLLTTLRHQDL
FVVKQSISCGTALFGAVLEEIALQLHGSGKIEQWLEELWSWMVKFMESVSAILMEPGSNG
IKVPALKFIETCILYFTPAEDRGVFSTQGKFMRFNVSHLPINNSILNPAALEIEADRALN
FLLDVLQSATTFRGSFVIAVINTLATIVKRRPLQSKVILSALISFNPNFESQKGHASSIR
YSLRTAFVGFLRCNHPLFTESRDKINKALRAIIPGESIDQIVRQVERMARTINRVSHEIR
SNKGEPPAIQELQTGNQIRNKISRLSSAALSEELPAKRIEFEVPLNMAHSTHMTSDLPDG
NDDGNGDYSSNTSLANGDLSAAEKMIAMIGALLAEGERGAESLELLISNIHADLMTDIVI
ETMKHLPKNLMAISVWHNNAQLNEETPSSSISSQVVPTAAIVSAPTPLPAELASTGVGTN
GVGIFSPDTSTVSNLAVEVRRDPRRDPRRLDPRWPGPVGSLHSAPLNSENSSDAQTVPSQ
LSSKAVPTSETVIVEQSSMPLTYKTEVELSEIPDTQRTGKIQSLEASEVQDNAMAMEQTS
DVHTPPNLTCEQAVEEQLAESTPSDATANDDIYNLPESDEFASPDINSMVSEENFHNLIA
HPSLLELKDEQRSNLHRLAVTRIIKDYKKFHVTGSSQPCLPLLARLVAHSGADDDILMFL
EEHIVLDYPHHKGHELAMHVLYYLQAIVISKVDNCSSVATSYEKFLLGIAKALLDSFPAT
DKSFSKLLVEAPILPDSSLKLLEDLCHANYNEHHLEETRDGDHVTQGLVATWGLILGRPS
YRRACLDIALKCALHPQEEVRAKAIRLVANKLYLLNYASDSIEQFAMQMLLSVVEQQNFE
EDISTENSNDQQTEDELICGPRPSEPASSTSENNKDNQASVMKVPALSLSQAQQKTSLFF
ALCLKQKPSLLQFVFDIYGKAPKAVKQSIHQHIPVIVKNLSTYSHLLKIFSDPPEGSKIL
IVLVLETLTEEATPSSELIATVKHLYETKLKDAVILIPMLSSFSKDEVLPIFPRLVDLPL
EKFQAALARILQGSAHTGPALTPAEVLIAIHNINHQKDGVALKKITDACTACFEQRIVFT
QHVLEKSLNHLVEQVPLPLLFMRTVIQAIDAFPSLVDFVMGILSKLVTKQIWKMPKLWVG
FLKCAAQTQPRSFDVLLQLPSLHLESALNRHPNLWTPLAAYANQPNLRTSLPWQSLKVLG
VLDETQDDTRPSIPTTLQAPETRSSIHGTALP
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggttttggggtttcagccgacgggcgggatgcctcgcccaaatccgatgtt
gcggttttcagagactctcttcgagctcttgagttgttgaaggatctaggttccaaggtg
tcggaaaagttaattgctctgatgccaaatttgttgacaactttgagacaccaagacttg
tttgttgttaaacagtcaatttcttgtgggacggctttatttggtgctgttttagaagaa
attgcactccagttacatggttctggtaaaattgagcaatggcttgaagagttgtggtct
tggatggttaaatttatggagtcagtctctgcaattttgatggagcctgggtctaatgga
atcaaggtgcctgctctaaaatttatagaaacttgtattttgtattttacacctgctgag
gataggggagtattttctactcaagggaaattcatgagatttaatgtttcacatttgcca
atcaataattcaattctcaatccagctgctctggaaattgaagcagatagagctctcaat
tttcttcttgatgttttgcagtctgccactaccttccgtggttcttttgtcattgctgtc
atcaacactcttgcaacaattgtaaagagaagacctcttcaatccaaagttattctttct
gctttgatttctttcaatcctaattttgaatcccaaaaaggtcatgcttcaagcatacga
tactctctaaggactgcttttgtaggatttctacggtgcaatcacccattattcactgag
tccagagacaagataaacaaagcattgcgagcaataatcccgggtgaatcaattgatcaa
attgtacgtcaagttgaacgaatggcaagaactataaatcgtgtatcccatgaaattcgt
tccaataagggggaaccaccagctattcaagaactgcaaacggggaatcagattaggaac
aagatttcacgactctcaagtgctgctctttctgaagagttgcctgctaagagaatagaa
tttgaggtaccactgaatatggcacattctacacatatgacatcagatttgccagatggt
aatgatgatggaaatggtgattattcatcaaacacttctctagcgaatggtgacttatca
gcagctgaaaagatgattgccatgatcggtgctctcctggctgagggggaaagaggggct
gaatcccttgagcttcttatttccaatattcatgctgaccttatgacagatatagttata
gaaactatgaagcatctccccaagaacttaatggcgatatcagtctggcacaataatgca
caattaaatgaagagactccctcttccagcatttcttcacaggttgtgccaaccgctgca
attgtttctgcaccaactccattacctgctgaattggcatccactggtgtagggacaaat
ggagttggcattttcagtcctgatacatctactgtctctaaccttgctgttgaagttaga
agggatcccaggagggatcctcgtcgtcttgatccacgttggccagggccagttggaagt
ctacactctgcacctttgaactcagagaatagcagtgatgcacaaactgtaccatctcag
ctctctagtaaagctgttcctacttcagaaactgtcattgttgaacaatcttccatgcca
ttgacttataaaactgaggtggagctttctgaaataccagatactcagagaacaggcaaa
atacaatcattagaagcctcagaagtccaggacaatgccatggctatggagcaaacttca
gatgtccatacaccaccaaacttaacttgtgaacaagctgttgaagaacagctggcagag
tctacaccatcagatgctacagctaatgatgatatttataatcttccagaatccgatgaa
tttgcttcccctgatattaactcaatggtctctgaagagaattttcataatttgattgca
catccgtctctacttgaattaaaagatgagcagagaagcaatctgcacaggttagctgtt
actcggattatcaaagattacaagaaattccatgtcacaggatctagtcaaccatgcctt
ccattgcttgctcgtctggttgcacatagtggggctgatgatgacattcttatgttttta
gaagaacatattgtattggattatcctcatcacaagggccatgaacttgcaatgcatgtc
ctctattacctgcaagcaatagtgatttccaaggtagacaattgttcctcagtggctact
agttacgagaaatttcttctgggaattgcaaaggcattgttggattcctttccagctaca
gataaatccttcagtaaactgcttgttgaagctccaatactgcctgactcttcattgaaa
ttgttggaggatttgtgccatgcaaattataatgagcatcatttagaagaaacacgtgat
ggtgatcatgtcactcaaggtcttgttgcaacatggggcttaattttgggacgtccttct
tatagacgagcttgcttggatattgccttgaagtgtgcccttcatcctcaggaagaagtt
agagctaaagctattcgattggttgcaaacaagctttatcttctgaactatgcttcagat
agtattgaacagtttgctatgcaaatgctactatcagttgttgagcagcaaaattttgag
gaggatatcagtactgaaaactcgaatgaccaacaaacagaagatgaacttatttgtggc
cccaggccttcagagcctgcttcttctacgagcgaaaataataaagataatcaagcttct
gtgatgaaggttcctgcattatctttgtcacaagcacaacagaaaacatccttattcttt
gctctatgcttaaagcagaaaccaagtcttcttcaatttgtatttgacatatatgggaag
gctccaaaggctgtcaagcagtctattcatcaacacattccagtcattgtaaagaatctt
agtacatattctcacctattgaaaatattctctgatcctccagaaggaagtaaaattctg
attgttttggtcttggaaactctaactgaagaggcaacaccttcgtctgagttaattgcc
acagtcaagcatctttatgagactaaactgaaggatgcggttattctcattccaatgctg
tcttctttttcaaaggatgaggtgttgcctatctttccacgtctagttgatcttcccttg
gagaaatttcaagctgctttagctcgcattttgcagggatctgcacatactggtcctgca
ttaactcctgctgaagtattgattgcaattcacaatattaatcatcagaaagatggtgtt
gcacttaagaagataacagatgcttgcacagcatgttttgagcaacgtatagttttcact
cagcatgttctagaaaaatcattgaatcatttggttgagcaagtgcccctccctcttctt
ttcatgagaactgttattcaagcaatagatgcctttccatctctggttgattttgttatg
ggtatactttcaaagttagtgacaaagcagatatggaagatgccaaaattatgggtggga
tttctaaaatgtgctgcacagacacaacctcgttcttttgatgttctacttcagttgcca
tcacttcatcttgagagtgctttaaatcggcatcctaacttatggactccgcttgctgct
tatgctaatcaaccaaacttgaggacttcactaccatggcaaagcctcaaggtgttgggt
gttcttgatgaaacacaagatgatacaagaccatctattcccacaactttgcaggctcct
gaaacaagatcttcaattcatggtacagcacttccatga
DBGET
integrated database retrieval system
