Zingiber officinale (ginger): 122042560
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Entry
122042560 CDS
T08725
Name
(RefSeq) methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X1
KO
K01968
3-methylcrotonyl-CoA carboxylase alpha subunit [EC:
6.4.1.4
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00280
Valine, leucine and isoleucine degradation
zof01100
Metabolic pathways
Module
zof_M00036
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
122042560
Enzymes [BR:
zof01000
]
6. Ligases
6.4 Forming carbon-carbon bonds
6.4.1 Ligases that form carbon-carbon bonds (only sub-subclass identified to date)
6.4.1.4 methylcrotonoyl-CoA carboxylase
122042560
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
MCCA_BT
Biotin_carb_N
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
ATP-grasp
Biotin_lipoyl_2
HlyD_D23
HlyD_3
ATP-grasp_3
ATPgrasp_ST
ATP-grasp_4
Motif
Other DBs
NCBI-GeneID:
122042560
NCBI-ProteinID:
XP_042458663
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Position
2A:147007269..147021835
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AA seq
741 aa
AA seq
DB search
MTIMATLVRRRPPIGTLIWNSHPGFSLRRFFSSPAAAAGEPERGIEKILVANRGEIACRI
MRTAKRLGIRTVAVYSDADSSSLHVKSADEAVRIGPPPARASYLNASAIVEAARRTGAQA
VHPGYGFLSESADFAQLCETEGLIFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGD
NQDANLLKLEAEKIGYPILIKPTHGGGGKGMRIVQRPDEFIEAFLGAQREAAASFGINTI
LLEKYITHPRHVEVQVFGDKHGNVIHLNERDCSVQRRHQKIIEEAPAPNVTHEFRSHLGK
AAVSSAKAVGYYSAGTVEFIMDTISGEFYFMEMNTRLQVEHPVTELIVGQDLVEWQIHVA
NGGHLPLNQEQVPLNGHSFEARIYAENVPKGFLPATGTLHHYRPVPVSSTVRVETGVEEG
DTVSMHYDPMIAKLVVWGENRSAALGKLKNCLHNFQVAGLPTNIAFLNTLSDHWAFKKGL
VETHYIEHFKNDLFPYELPKEMYDVAMQNATVVAACICEVEKITSRETIPSDNPLLSLWY
SHTPFRMHHNAKRLIELEWDKELIGSFEEILKLVITYQPDGSYLVETEGGGPPGLEVKVM
HVGNRDYRVDVNGLQTDVTLAIYSKERNKHFEVWQGKHHHHFRQSAKLHQSSDNELEHKT
NLQTSHPKGSVLAPMAGLVVKVLLQNGAFVEEGQPILVLEAMKMEHVVKSPRAGYLNDLQ
VSAGQQVFDTTVLFNIKDKQD
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgacgataatggcgacgctcgttcgtcgcagacccccgatcgggactctgatttggaat
agccaccctggtttctcacttcgtagattcttttcttcaccggcggcggcagcgggagag
ccggagcggggcatcgagaagatccttgtggcgaaccggggagagatcgcctgccggatc
atgcgcactgctaagaggttgggaatccggacggtcgcagtctacagcgacgccgacagt
tcctccctccatgttaagtccgccgacgaggccgtccgaatagggccgccccccgcccga
gctagctacctcaatgcgtccgcgatcgtcgaggccgctcgtcgtacgggagctcaggct
gtccacccaggttatggtttcctctcagaaagtgctgatttcgcacagctttgcgagact
gaagggctcatatttattggtcctccagcatccgccataagagacatgggcgataaaagt
gcatcaaagagaatcatgggtgcagcaggtgtacctttagtgcctggttatcatggtgac
aaccaagatgccaatctcttaaaattagaagctgaaaagattgggtatcctattttgata
aaacccacacatggaggtgggggaaagggtatgagaattgttcaaaggcctgatgaattt
atcgaagcttttctgggagcacaacgtgaagctgctgcttcctttgggataaacactatc
ttactagagaaatatataactcacccccgccatgttgaagtccaggtatttggagataag
catggaaatgtaatacatctaaatgagagagattgcagtgtgcaaagaagacatcagaag
attattgaagaagctccagcaccaaatgtcacacatgagtttcgttcccatttaggtaaa
gctgcagtttcttctgccaaggcagttggttattacagtgctggaacagtagaatttata
atggacaccatctcaggggagttctacttcatggagatgaatactcgtcttcaggttgag
catcctgtcactgagttgatcgttggtcaagatcttgtggagtggcagattcatgttgca
aatgggggacatttaccattgaatcaagaacaagtgccgctgaatggccattcttttgaa
gctcgaatatatgccgaaaatgttccaaaaggatttctgcctgcaactggaacactacat
cactatcggccagttccagtttcatctactgtgcgtgttgaaactggagtggaggaaggg
gatactgttagcatgcactatgatcctatgattgctaaacttgtagtatggggagaaaac
cgatctgctgccttaggcaagctgaagaattgcttgcacaatttccaggttgctgggttg
cctaccaacatcgcattcctcaacacactttcagatcattgggcctttaagaagggtcta
gttgaaacacactatattgaacattttaaaaatgacctttttccctatgaattaccaaag
gaaatgtatgatgttgctatgcaaaacgcaacagttgttgctgcctgcatatgtgaagtg
gagaaaatcacatctagagagactattccaagtgacaatccgttactttcactgtggtat
agtcacacacctttcagaatgcatcataatgcaaaacgcctgatagaactagagtgggat
aaagaactaattggcagctttgaggagattctgaagcttgtgattacctaccaacctgat
gggagctacttggttgagactgaaggcggtggtcctcctggtttggaagtgaaggttatg
catgtaggaaatagagattacagagtagatgttaacgggctgcagaccgatgtgactttg
gcaatatattcaaaggaaagaaacaagcactttgaagtttggcagggcaagcatcatcat
catttcaggcaatctgctaagcttcatcaatcaagtgataatgaattagagcacaaaacc
aatttgcagacctctcatcccaaaggaagtgttttggcgcctatggctggtttggtggtt
aaagtgctgcttcaaaatggtgccttcgtcgaggaaggccaacctattttggttcttgaa
gcaatgaaaatggagcacgtcgtcaaatctccccgtgctggctacttgaatgatcttcaa
gtttctgccggccaacaagtcttcgacaccactgtgttgtttaacataaaggataaacaa
gattga
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