Zingiber officinale (ginger): 122042619
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Entry
122042619 CDS
T08725
Name
(RefSeq) upstream activation factor subunit spp27-like isoform X1
KO
K15223
upstream activation factor subunit UAF30
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122042619
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription initiation factors
122042619
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Gene cluster
GFIT
Motif
Pfam:
SWIB
DEK_C
Nop14
CDC45
Paf1
Motif
Other DBs
NCBI-GeneID:
122042619
NCBI-ProteinID:
XP_042458749
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Position
2A:148705186..148715382
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AA seq
402 aa
AA seq
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MVSDAELVERLREFVRCSDLSTTTTSSVRRRLEEDFGIDLSQKKGFIRDQVDLFLTELNE
NREAEEEEKAHDGLEVAKDEEEKVHDSSEAEKELNEEDEEGGSAESDNGDEEEEGDKEDE
DEDGEENDDGKSSRKRKTKEISKEVKKRGGGFTKLCSLSPLLQDFVGETELARTEVVKRL
WTYIREKDLQDPKNRRKIICDERLHTLFNVNSIDMFQMNKALSKHIWPLNSEESPVAPVI
PKESNKKPKKESDGQRQKGQSGFLMPLRLSNELIQFFGTGEDALSRADVVKRMWAYIKGN
NLQDPADKRNVICDEKLKELLKVDSFHGFTVSKLLTPHFIKSKDLVPCPSSNHEIGVLTF
YTDRDRPEPFVIVEAFGGSPRVANPQRNRLIASHGTTIWVIR
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggtttcggacgcagaactcgtggagcggcttcgggaattcgtccgatgctccgacctc
tccacgactacaacttcttctgtccgccgccggctcgaggaggatttcggcatcgacctt
tcgcagaagaagggcttcattagggatcaggtcgacctcttcctgactgagcttaacgag
aatagggaggcggaggaggaggagaaggcccacgacggtctcgaagtagcaaaggacgag
gaagagaaggtccacgacagttccgaagcagaaaaggagttgaatgaggaagacgaagaa
ggaggaagtgccgagtcggataatggtgatgaagaggaggaaggagacaaggaggacgag
gatgaggacggtgaggagaatgatgatggaaaaagcagcaggaaaagaaagactaaggaa
atcagtaaggaagtcaagaaacgaggtggtggttttaccaaactctgtagtctttcccct
ctactacaggattttgttggggaaactgagttagctagaactgaggttgttaagaggcta
tggacttatattcgtgaaaaggacttgcaagatccaaaaaatagaagaaagatcatatgt
gacgagagattgcacactctttttaatgtcaatagcattgacatgtttcaaatgaacaaa
gctttgtcaaaacatatttggcctttgaactctgaagagagcccagttgctccagtaata
ccaaaagaaagtaacaagaagcccaagaaagaaagtgatggtcagcgtcaaaaaggacaa
tcaggctttcttatgccccttcgcctatctaatgaactcatacaattttttggaactggt
gaggatgcactgtcaagggctgacgttgtcaaaaggatgtgggcttacataaaaggaaac
aatttgcaggatcctgctgataagaggaatgttatctgtgatgagaaacttaaagagctt
ttgaaggttgattccttccacgggttcacagtatcaaagttactgacacctcatttcatc
aagtcaaaagatttggtgccttgccccagctcaaaccatgaaattggtgttttaaccttc
tacacagacagggatcgaccagaaccatttgtcattgtagaggcatttggaggtagtcca
cgcgtggcgaatcctcaaaggaataggctaattgcttcacatggaactaccatctgggtg
ataaggtga
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