Zingiber officinale (ginger): 122042770
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Entry
122042770 CDS
T08725
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122042770
09124 Replication and repair
03420 Nucleotide excision repair
122042770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
zof03051
]
122042770
03400 DNA repair and recombination proteins [BR:
zof03400
]
122042770
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122042770
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
122042770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
UBA_RAD5A
Rad60-SLD
TPR_20
A_thal_3526
Dsc3_N
STI1-HOP_DP
Motif
Other DBs
NCBI-GeneID:
122042770
NCBI-ProteinID:
XP_042459007
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Position
2A:complement(152725912..152760789)
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AA seq
403 aa
AA seq
DB search
MRLSVKTLKGTSFEIDANPGDTVVDVKKSIETSQGESVYPAGQQMLIHQGKILKDDTTLA
DNEVSDNSFLVIMLSKTKGSSSGVMTAKGSSSGVMTAKAPLSQAPPTNTAAPVHSVPASV
PSQTSASTLSIAPIDTATPTATATTASITSNPTEDDPYSQVASNLVAGGNLEQTIKQILD
MGGGAWERDTVIRALHAAYNNPERAVEYLYSGIPENAEAQTLAQVPPSGQTLSSTVEALP
SVQSLVPSSGPNSSPLDLFPQGLPNFGSNAGGGSLDFLRDNPQFQALQALIQANPQILQP
MLQELGKQNPQFMRIFQEHQGEFLRLLNQPAEGTEAEGNLLGQLDAAMPEALVLVTDEER
IAIERLESLGFSRAAVLQAFFACDKNEELAANYLLDHMHEFEE
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaggctttccgtgaagactctcaagggaaccagcttcgagatcgacgccaaccctggc
gacacggttgttgatgttaaaaaaagtattgagacatctcaaggagaatctgtttatcca
gctgggcagcagatgcttatacatcaaggaaaaatcctaaaagatgatactacattggcg
gataatgaagtatctgataatagctttcttgttataatgctaagcaagactaagggttca
tctagtggagtaatgactgcaaagggttcatctagtggagtaatgactgcaaaagcacct
ttaagtcaggctccacccactaatacagctgccccagtccattcagttccagcatctgtt
ccatctcaaacatctgcatcaacattatcaatagcacccatagatacagcaaccccaact
gccactgctaccacagcctcaataactagcaaccccactgaagatgatccttacagtcaa
gttgcatcaaatcttgttgctggtggcaacttggagcaaaccatcaaacaaattcttgac
atgggtgggggggcttgggaaagagacactgttattcgtgccttgcatgctgcatataat
aatcctgagcgtgcagtcgaatatctatactctggtattcctgagaatgccgaagcccaa
acccttgcacaggtacctcctagcgggcaaactctcagttctacagtcgaagctctgcca
tcagttcagtctttggttccttctagtggtcctaattctagccctttggatctctttccc
cagggccttcccaattttggatcaaatgctggtgggggcagccttgattttttgagggat
aatccacagttccaagctttgcaggctttgatccaggcaaatccacaaatcttacagccc
atgctgcaagagttggggaaacaaaatcctcagtttatgaggatctttcaggaacatcaa
ggagagttccttcgattattaaaccaacctgctgagggtactgaggctgagggaaatctt
ctcggtcaattggatgctgcaatgccagaagcccttgttctcgtcactgatgaggagcgt
atagccattgaacgtctcgagtcattgggcttcagtcgcgctgctgtgttgcaggcgttc
tttgcttgcgacaagaacgaggagctggccgccaactatcttctggatcatatgcacgag
tttgaggaataa
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integrated database retrieval system
