Zingiber officinale (ginger): 122042909
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Entry
122042909 CDS
T08725
Name
(RefSeq) transcription factor IIIB 90 kDa subunit-like
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122042909
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
122042909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
Zn_Ribbon_TF
BRF2-like_C_cyclin_rpt
Fer4_12
Motif
Other DBs
NCBI-GeneID:
122042909
NCBI-ProteinID:
XP_042459236
LinkDB
All DBs
Position
2A:complement(160320439..160340502)
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AA seq
623 aa
AA seq
DB search
MGWCSHCDDECPIFRDPDNGYVCCALCGRILDQDIYYTGPTFAKDSSGQSQLTGNLLKIL
QHELSGSYERTLKRGKDEISYIVSGLDISGGDPLIDNAHVFYQLAVDKNFTKGRRLPYVA
AACLYLACRQRKMDYLLIDFSDYLQISVYVLGAVFLQLCKTLKLLEHPIVQNIVDPSLFI
NRFTERLLGRKNNAVSDTALRLVASMKRDWMQTGRKPSGLCGAALYISVHSHGLNYSKSD
IGSVVHICEATLTRRLLEFESTESGSLTMEEFLFRAEDVDGEAPSNPLPKPGKLLCQHKE
TDAAHFAHGLCKECYDEFIEISGGLQGGADPPAFQRAEKQRMEKIKLPDESNLDNQETNE
KHINIPNEGSCDVNSTSYVSPVEGKPSKELRSADPAEHELIDPSTFSEQYGFSDSENDGS
DHFSDIDDAEVNGYLHTEKEKELKKIIWEEMNKEYLEEQAAKEAAAAAAKEAYEAMYANA
SEDLLAAKELVEATDAALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVN
YEALETMFSSEQNHAKKQKVELDVGDPDETLDKKDDHADILDNKDDDGPGASDNDNYDVS
YDDYKGDNDEYDYGDADHDYEDF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgggttggtgtagtcattgtgacgacgaatgcccaatctttagggatcctgacaatgga
tatgtgtgctgtgccttatgtggaaggattctcgatcaagatatttactacactggtccc
acttttgcgaaggatagtagtggtcagagtcaactaactggtaatctcttgaagattttg
caacatgaattatctggatcatatgaaagaactctaaagagaggaaaagatgagattagc
tatattgtaagtggcctggacattagcggcggagatcctttaatcgacaatgcacatgtt
ttctatcagttggcagtagataagaatttcaccaaaggacgcaggctaccttatgttgca
gcagcttgtctctatcttgcttgcaggcaacggaaaatggactatcttctcattgatttt
tctgactacttgcagataagtgtatatgtgcttggggctgtgtttttgcaactttgtaaa
actttgaagctcttggagcacccaattgtccagaatatagtggatccaagtctttttatc
aatcgttttacagagcgacttttaggcagaaagaataatgcagtttcggatacggctctt
cgcttggttgcaagcatgaaaagagattggatgcagacagggaggaaacccagcggatta
tgtggtgcagcattatacatatctgtacattctcatggacttaattactccaaatcagat
attggttctgttgtacacatttgtgaagcgactctaactagacgactactagagtttgaa
agtacagagtctggtagcttaactatggaggagttcctttttagggctgaagatgtagat
ggagaagctccatccaatccattacctaagcctggtaaacttttatgtcagcacaaagaa
actgatgcagctcattttgctcatggactttgcaaggaatgttatgatgagttcattgaa
atatccgggggacttcaaggtggtgctgatcctccagcctttcaacgtgctgagaagcag
aggatggaaaaaataaaattaccagatgaatccaacctagataaccaggaaacaaatgag
aagcatataaatatccctaatgagggaagctgtgatgttaattcgacttcatatgttagc
cctgttgaaggaaaaccatcaaaggaacttcgaagtgctgatcctgcagagcatgagttg
attgacccatcaactttcagtgaacaatatggtttttcagactctgaaaatgatgggagt
gatcatttctctgacattgatgatgctgaggtaaatggatatctacacactgagaaagag
aaggaacttaaaaagattatatgggaagaaatgaacaaagagtatcttgaggaacaagca
gcaaaggaagctgctgctgcagctgccaaggaggcatatgaagcgatgtatgcaaatgct
tcagaagatttgctagccgcaaaggaacttgtggaagcaactgatgcagctctagtaaaa
tccaaaaaggaaaagaaacaaagacgtattgctgaagttaaaaatatgattcctgcacgg
actcctcttgaagcagtacgtcggatgcttatgaaaaagactttcagtgcaaaagtcaac
tacgaagcgttggaaactatgttctcgtctgaacaaaaccatgcaaaaaagcaaaaagtt
gaattggatgttggtgatcctgatgaaactcttgacaagaaggatgatcatgcagatatt
ctagataacaaggatgatgatgggccaggagcatctgacaatgataattatgatgttagt
tatgatgattacaagggagataatgatgaatatgactatggagatgcagaccatgattat
gaggatttttga
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