Zingiber officinale (ginger): 122042919
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Entry
122042919 CDS
T08725
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122042919
03410 Base excision repair
122042919
03420 Nucleotide excision repair
122042919
03430 Mismatch repair
122042919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122042919
03036 Chromosome and associated proteins [BR:
zof03036
]
122042919
03400 DNA repair and recombination proteins [BR:
zof03400
]
122042919
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122042919
DNA Replication Termination Factors
ELG1-RFC complex
122042919
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122042919
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122042919
Check point factors
HRAD17(Rad24)-RFC complex
122042919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_11
AAA_16
DNAX_ATPase_lid
AAA_assoc_2
ATPase_2
AAA_5
AAA_14
AAA_7
AAA_30
DUF815
AAA_24
RuvB_N
ResIII
bpMoxR
AAA_19
AAA_3
nSTAND3
MCM
AAA_2
TniB
Mg_chelatase
SLFN-g3_helicase
ABC_tran
TIP49
AAA_28
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
122042919
NCBI-ProteinID:
XP_042459249
LinkDB
All DBs
Position
2A:160739612..160763579
Genome browser
AA seq
356 aa
AA seq
DB search
MAKASAPMEIDDASLPSSTTDKGKSLFASDPKSAPWVEKYRPQSLADVAAHRDIIDTIDR
LTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYKNMILELNASDDRGIDVVRQQIQN
FASARSLSFGTKSTVKLVLLDEADAMTKDAQFALRRVIEKHTKSTRFALICNHVNKIIPA
LQSRCTRFRFAPLDSSNIRERLEHVIKAEGLDVDQGGLTSLVRLSNGDMRKALNILQSTH
MSSQHINEEAVYLCTGNPMPKDIEQIAYWLLNESFKSAFNYISDVKMRKGLALVDIVREV
TMFVFKIKMPPTIRVKLINDLADIEYRLSFACNDKLQLGSLISTFTNARCALVAAV
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcaagtgctcccatggagatcgacgatgcctcgctaccctcttcgacgacc
gacaaggggaaatcgctttttgccagtgaccccaaatctgcgccttgggtggagaagtat
agaccccaatccctcgcggacgttgccgcccaccgtgacatcatagacaccatcgatcgc
ctgacgagcgagaataggctaccgcatcttctcctttacgggcctccggggactggaaag
acgtccacgatcctggctgttgcccggaagctctatggagcgcagtataaaaatatgatt
ttggagctcaacgcgtccgatgataggggcattgatgttgttcgccagcagattcagaat
tttgccagtgcaagaagtctttccttcggaacaaagtctactgtaaagttggtcctacta
gatgaagcagatgccatgaccaaagatgctcaatttgcattgagacgagtgattgagaaa
catacaaagagcacaaggtttgctcttatctgtaatcatgtgaacaagatcattcctgct
ctgcagtcaagatgcactcggtttcgttttgctccacttgattcaagcaacattagagaa
cgcttggaacatgtgataaaagctgaagggcttgacgtagatcagggcgggttgacatca
ttggtgaggctgagcaatggtgatatgagaaaggctctgaatattttgcagtctacccat
atgtcatctcagcatataaacgaagaagctgtatatctgtgcaccggaaatccaatgcca
aaagacattgaacagattgcttattggttattgaatgagtcctttaaatctgcttttaat
tatatatctgatgtcaaaatgaggaaaggactggcgttggtggatatcgtgagggaggtt
acaatgtttgttttcaaaatcaaaatgccacctactatccgagtcaagctaatcaatgat
ttggcagatatagaatatcgattgagctttgcctgcaatgacaagttgcagcttggttcg
ctcatctccactttcacaaatgctcggtgtgccttggttgctgccgtttag
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integrated database retrieval system
