Zingiber officinale (ginger): 122042989
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Entry
122042989 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 12b-like
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122042989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122042989
03036 Chromosome and associated proteins [BR:
zof03036
]
122042989
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122042989
Coactivators
SAGA/TFTC/STAGA complex
122042989
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122042989
STAGA complex
122042989
TFTC complex
122042989
SAGA complex
122042989
SLIK complex
122042989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Histone
Motif
Other DBs
NCBI-GeneID:
122042989
NCBI-ProteinID:
XP_042459340
LinkDB
All DBs
Position
2A:complement(163752573..163765051)
Genome browser
AA seq
603 aa
AA seq
DB search
MAENSASASPSKVPASGGDAEIAPANSNPNMPSPHIPPSPSMGVGDLSQINSPQLSQSHA
LSPAAALDYASKQQIIQSQQQQPSSPSQQPQSQAQIQSQQQQQKQQAQQPNMNFQMQQSL
QRSGSMPRLSQIQQQFGASAAAGAMRQHAGMYGGQMNLGGAQIQQQQLAAAAAAGGMGRS
GIITQAAQLPMLPGQTTQHFNMQSQMLTQPRQKSLLQTGQFNPGNSSAQALQGMQNMGMI
SNLSMNPQLRAYGQRIAHGQMRQQQLQQQIALTSPQKLPGQSLPRTPSAAALNSQVSGLM
QNGQSTMVQTTLSQQQQQWLKHLQPSLPSPVSPSYHLQQQRQQQSFLPQQLASSQHHQKP
MALTQQQISQLMQQQPQPQLGGQQQHLLHQQQLQQIQQLQQQQQLQSPRLAGHAVQNPLS
LSGSQEEAPASGVTGGNSSQGTEATNQLLGKRKIHDLVMQVDPHGKLDPEVEDLLLQIAD
DFIDSVTTFACSLAKHRKSSTLDTKDVLLHLEKNWNLSVPGYSREERKYPRTSLSLDIHK
RRRVIRESAETHLSEGDVGGSKVTNKQLVNNSGSDHPINPSSVAEQLSLPVVGSQIAHKP
QRF
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaattctgcgtccgcttcgcctagcaaggttccggctagcggcggcgatgcc
gaaatcgcgccggccaactccaaccctaacatgccgtccccgcatattcccccttcccca
tccatgggcgtcggtgacctatcccagatcaactccccccaattgtctcagtcccatgct
ctcagccccgccgctgccctagattacgcctccaagcagcagatcatccaatcacagcaa
cagcagccgtcgtcgccgtcgcagcaaccccagtctcaggcgcagatccagagccagcag
cagcagcagaagcagcaagctcagcagccaaatatgaacttccagatgcagcagagcctc
cagcggtccggatcgatgccgcggctgagccagatccagcagcagttcggagcctctgcg
gccgctggcgcgatgcggcagcatgcagggatgtacggcgggcagatgaatcttggtggc
gcccagatccagcagcagcagctggctgccgccgctgctgctggagggatgggtcgttca
gggattattacacaagcggctcagctaccgatgctacctgggcagactactcagcatttc
aatatgcagtctcagatgctcactcagccaaggcagaaaagcttacttcaaactggtcag
ttcaatccaggaaattcttctgcccaagccttgcaaggaatgcagaatatgggtatgatc
agtaaccttagcatgaacccacaactaagagcatatggccaacgcattgcgcatgggcag
atgagacagcaacaactacagcaacaaatagcccttacatcacctcagaagctacctggt
caaagcttacctaggacaccttcagctgctgcactcaactcccaggtgtctggtttgatg
caaaatggacaatcaacaatggttcaaacaactctttctcagcagcagcagcagtggttg
aaacatctacaaccatcattgccttctccagtttctccttcgtatcatcttcagcaacaa
aggcagcaacaatcattcttgccacaacaactagcttcatcacagcaccaccagaagccc
atggccctgacacaacagcagatctctcaactgatgcaacagcagccacaaccgcagcta
ggaggtcagcaacagcatttgctacaccagcagcagcttcaacaaattcaacagttacag
caacaacagcaattgcaatctccaagacttgctggtcatgcagtccaaaatcctttatct
ttgagcggatcacaagaagaggcacctgcttctggagtgacaggtggaaattctagtcaa
ggaacagaagcaactaatcaacttcttggaaagcgaaagatacatgatctagttatgcag
gtagatcctcatggtaaactggatcctgaagttgaggacctcctcttgcaaatagctgat
gacttcattgactcggttactacatttgcttgcagtctggcgaaacatcgcaaatcttcc
accttggacactaaggatgtactgcttcacctagaaaaaaattggaacttgagtgttcca
ggttattcaagggaggaaaggaaatacccaagaacatcattatctttggatatccacaag
aggcgacgggtgatacgagagtcagcagaaacacatctatcggaaggagatgtaggtggt
tctaaagtcacaaataagcaactggtaaacaattctgggagtgatcatccaataaatcct
tcgtccgtcgcagagcagttatctcttcctgtggttggctcacaaattgcacacaaaccg
cagagattttag
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integrated database retrieval system
