Zingiber officinale (ginger): 122043121
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Entry
122043121 CDS
T08725
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122043121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122043121
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122043121
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
F-box_5
LRR_At5g56370
Transp_inhibit
Nop53
F-box-like
LRR_4
F-box
SpoVT_C
Motif
Other DBs
NCBI-GeneID:
122043121
NCBI-ProteinID:
XP_042459528
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Position
2A:167331563..167338990
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AA seq
737 aa
AA seq
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MGKAAKGSRKGKKAWRPDITTNHIDDYFDESIRDAFTGKASETKSTDKTLVKRKIEKHVE
KVLHHESSLQKNPFVQAVPSSSSKKSKRKKKQVMTQIIQTGKSSQVDDITSTLIDIWNNE
GEAIDRPKKKQKASIILAIEVEPPGCSFNPSFEAHQDRAFSWAATLLDEVWEHIFSFLPT
DADRHAVSLVCRSWYQIERMSRRKIIVRNCYAVAPAAVVRRFPEVRAATIKGKPCFADLL
RSNWGGKAGKWIQWMAEGWPLLEELRLKRMVVSDDCLELIAQSFKNFRVLSLVFCEGFST
VGLAAIAANCRNLKVLDLHQYKAKENCINWISHFPESFTSLVTLNIACLDCEMNVSFLER
LISRCPYLKTLRLNHATPLEKLVSLLHRAPQLVDLGIGTLIGEGYPGLFSKLESAFAHLK
HLKNLFWKAGPFYLPAIYPICEGLTTLHLFDSSIQAPELSKVVSQCKNLQQLWVRDLIED
DGLIAVASSCKLLRKLQIVPSDPPHCPLTEIGLIAVSSGCVMLESVLYFCRQMTNSALLT
IANNRPNLTCFRLCIVKPYTPDYITQEPLDAGFGAIVESCKDLRRLSMSGLLTDCVFKTI
GASANRLERLSVGFAGDGDAGLHYILSGCRKLRMLEIRKCPFGIKALLDNADKLKTMRCL
WMSSCSVTLGECRLLAKKMPRLSVEVIDENGGALQSRRDLSRRDLLRRDILPAKKLYIYN
SITGPRIDAPPSVLTVW
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggcggcgaagggatcgcggaaggggaagaaggcatggaggcccgacatcacc
accaaccacatcgacgattacttcgacgagtccatcagggacgccttcaccggcaaggct
tccgagacgaaatccactgacaaaactcttgtgaaaagaaagattgagaaacacgtggaa
aaagttctccatcatgagagctcgcttcagaaaaatccttttgtccaagctgttccatcg
tcttcttcaaaaaaatcgaagcggaaaaagaaacaagtgatgacacaaataatacagacc
ggcaaatcttcacaggtagatgatataacttccactttaattgacatatggaataatgaa
ggtgaagcaattgataggcctaaaaagaaacagaaggcttccatcattctagctattgaa
gtggagccaccaggctgttcatttaatccttcatttgaggctcatcaagacagagccttc
tcttgggcggccaccttactcgacgaggtgtgggagcacattttctctttcctcccgacc
gacgctgaccgccatgctgtgtccctggtttgccgctcttggtatcagatagaacggatg
tcgaggcggaagatcatcgtgcggaactgctatgcggtggcaccagccgcagtggtgcgg
cgattcccggaggtcagggcggcaaccatcaaggggaagccatgttttgcagatttattg
cgctccaattggggcggcaaggcggggaaatggatccaatggatggccgagggatggccg
cttttagaggagcttcgcctcaagcgaatggtggtctctgatgattgcctcgagcttatt
gcccagtcctttaagaattttagggttctgtctctagtcttctgcgaagggttcagcact
gtcgggctggctgccattgcagccaactgcaggaatctgaaggtacttgatctgcatcaa
tataaagcgaaggagaattgtataaattggatatctcattttccagaatcctttacttcc
ctggttactctcaacattgcatgtctggattgtgagatgaatgtatcttttcttgagcgc
ctcattagcagatgtccctatctcaagaccctcagactcaatcatgccactcctctagaa
aaacttgttagccttctacacagggctccacagctagtagaccttggaattggcactctc
ataggagaaggttatccaggacttttctccaagcttgaatctgcttttgctcacttaaaa
catctgaagaatctattttggaaagctggaccattttacttgcctgcaatatatccaatt
tgtgaaggtcttacaacactgcatctctttgactctagcatacaagcaccagagctctca
aaagtagttagccagtgtaaaaatcttcaacaactatgggttagggacttaattgaggat
gatgggcttattgctgtggcatcatcctgcaaactcctccgaaaattgcaaatagttcct
tctgatccacctcactgtcctctcacagaaattggccttattgctgtgtcttctggttgt
gtaatgcttgagtctgttctctatttttgccggcagatgactaattctgccctccttact
attgctaataatcgccccaatctcacatgcttccggctctgcatcgtcaagccttacacc
cctgattatattactcaagaacctctagatgctggctttggggctattgttgaatcctgc
aaggacctccgacgtctctccatgtctggtcttcttactgattgtgtgttcaaaactatt
ggggcctcagcaaatcgtcttgagcggctctcagttggttttgctggtgatggggatgca
ggtcttcattacattctatctggttgtaggaaattacgcatgctggaaattaggaaatgc
ccgtttgggatcaaggcattattggacaatgcagataaactgaagacaatgcgatgcctt
tggatgtcatcatgctctgtgacactgggggaatgcagattattagctaagaagatgcca
cggcttagcgtggaggttattgatgagaatggaggggcgttgcagtcacggcgtgatctt
tcacggcgtgatcttttacggcgtgatattttacctgccaaaaaactctatatttacaat
agtattactggcccaagaattgatgcaccaccgtctgtcttgaccgtttggtga
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