Zingiber officinale (ginger): 122043123
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Entry
122043123 CDS
T08725
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500 isoform X1
KO
K14485
transport inhibitor response 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122043123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122043123
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122043123
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
F-box_5
LRR_At5g56370
Transp_inhibit
F-box-like
F-box
Nop53
LRR_4
LRR_14
BOP1NT
Motif
Other DBs
NCBI-GeneID:
122043123
NCBI-ProteinID:
XP_042459529
LinkDB
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Position
2A:167448997..167456261
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AA seq
758 aa
AA seq
DB search
MGKAAKGSRKGKKAWRPDITTNHIDDYFDESIRDAFTGKASDTKSTDKIPAKRKFEKHKE
KVLHYENPFVQAVTSSSSKKSKRKKKQVNTQTIQHDKFSQVDDISSTLTDIWNNEGEATD
RPKKKASIIPVVEVEPPGCSFYPSFEACQDSFALVVASGMQKIYKKELGPQPLLETIPGE
AIANEDDGALSWTAAFPYEVWEHIFSFLPTDADRHAVALVCRSWYQIERLSRRKIFVGNC
YAVAPVAAVRRFPEVRVATIKGKPSFADLLCTDWGGGVEMWIQSMANGWPLLEELQLKRM
VVSDDCLKLIARSFKNFRVLSLAFCEGFSAVGLAAIAADCRNLEALDLHQYRVKKNCINW
ISHFPESFTSLVTLNIACLDGEMNVSTLERLISRCPYLKTLRLNHVTPLEKLVGLLHRAP
QLVDLGIGILIGEGYPGFFSKLESAFAHLKHLKNLFWKAGPLYLPAIYPICEGLTTLHLF
ESSIKAPELAKVVCQCKNLQQLWIRDLIEDDGLIAVASSCKLLRKLQILPSDPPYCPLTE
IGLIAVSSGCVMLESVLYFCRQMTNSALLSIANNCPNLMCFRLCIPKPYTPDYITQEPLD
AGFGAIVESCKDLRCLSISGLLTDRVFKTIGASANRLKRLSVCCAGDGDAGLHYILSGCR
KLRMLEIRKCPFGIKALLDNADKLKTMRCLWMSSCSVTLGECRLLAKKIPRLNVEVIDET
GGGPVQSRRDHFPVEKLYIYNTFTGPRLDAPPSVLTVW
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggcggcgaagggatcgcggaaggggaagaaggcatggaggcccgacatcacc
accaaccacatcgacgattacttcgacgagtccatcagggacgccttcaccggcaaggcc
tccgacacgaaatccactgacaaaattcctgcaaaaagaaaatttgagaaacacaaggaa
aaagttctccattatgaaaatccttttgtccaagctgttacatcgtcttcttcaaaaaaa
tcaaagcggaaaaagaaacaagtgaacacacaaacaatacaacatgacaaattttcacag
gtagatgatatatcttccactctaactgacatatggaataatgaaggtgaagcaactgac
aggcctaaaaagaaggcttccatcattccagttgttgaagtggagccaccgggctgttca
ttttatccttcatttgaggcttgtcaagattcatttgctctagttgttgcaagtgggatg
cagaaaatttacaaaaaagaattgggtcctcagcctctactagaaacaattcccggtgaa
gcaattgcaaatgaagatgacggggccctctcttggacagccgccttcccctacgaggtg
tgggagcacattttctctttcctaccgaccgatgctgaccgccatgccgttgccctggtt
tgtcgctcctggtaccagatagaacggttgtcgaggcggaagatcttcgtggggaactgt
tatgcggtggcgccagtcgcggcggtgcggcgattcccggaggttagggtggcaaccatc
aaggggaagccgagtttcgcagatttactgtgcaccgactggggtggtggggtagagatg
tggatccagtcaatggctaatggttggccacttctcgaggagcttcagctcaagcgaatg
gtggtctctgatgattgtctcaagcttattgcccggtcctttaagaactttagggttctg
tctctagccttctgcgaagggttcagtgctgtcgggctagccgccattgcagccgactgc
aggaatctggaggcacttgatctgcatcaatatagagtgaagaagaattgtataaactgg
atatctcattttccagaatcctttacttccctggttactctcaacattgcatgcctggat
ggtgagatgaatgtatctactcttgaacgcctcattagcagatgtccctatctcaagact
ctcagactcaatcatgtcactcctctagaaaaacttgttggccttctacacagggctcca
cagctggtagaccttggaattggcattctcataggagaaggttatccaggatttttctcc
aagcttgaatctgcttttgctcacttaaaacatctgaagaacctattttggaaagctgga
ccattatacttgccagcaatatatccaatttgtgaaggtcttacaacactgcatctcttt
gagtctagcataaaagcaccagagcttgcaaaagtagtttgccagtgtaaaaatcttcaa
cagctatggattagggacttaattgaggacgatgggcttattgctgtggcatcatcctgc
aaactcctccgaaaattgcaaatacttccttctgatccaccttactgtcctctcacagaa
attggccttattgctgtctcttctggttgtgtaatgctcgagtctgttctctatttttgc
cggcagatgactaattctgccctccttagtattgctaataattgccccaatctcatgtgc
ttccggctctgcatccccaaaccttacacccccgattatattactcaagaacctctagat
gctggctttggggctattgttgaatcctgcaaagacctccgatgtctctccatatctggt
cttcttactgaccgtgtgttcaaaactattggggcctcagcaaatcgtcttaagcggctc
tcggtttgttgtgctggtgatggggatgcaggtcttcattacattctatctggttgtagg
aaattacgcatgctggaaattaggaaatgcccgtttggtatcaaggcattgttggacaat
gcagataaactgaagacaatgcgatgcctttggatgtcgtcatgctctgtgacactgggg
gaatgcagattattagctaagaagattccacggcttaatgtggaggttattgatgagact
ggaggagggccggttcagtcacggcgtgatcattttcctgttgaaaaactatacatttac
aatacttttactggcccaagacttgatgcaccaccttctgtcttgactgtttggtga
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