Zingiber officinale (ginger): 122043135
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Entry
122043135 CDS
T08725
Name
(RefSeq) small nuclear ribonucleoprotein E-like
KO
K11097
small nuclear ribonucleoprotein E
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122043135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122043135
03041 Spliceosome [BR:
zof03041
]
122043135
03032 DNA replication proteins [BR:
zof03032
]
122043135
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
122043135
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
Sm proteins
122043135
U2 snRNP components
122043135
Complex B
U1 snRNP components
122043135
U4/U6.U5 tri-snRNP components
122043135
Complex C
U2 snRNP components
122043135
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
122043135
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
122043135
NCBI-ProteinID:
XP_042459547
LinkDB
All DBs
Position
2A:complement(167805919..167810302)
Genome browser
AA seq
88 aa
AA seq
DB search
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEV
NVKKNTKKTLGRILLKGDNITLMMNTGK
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccacgaaggtccagcggatcatgacccaacctatcaatctcatatttcggttt
cttcaaagtaaagctcgcattcagatctggctctttgaacagaaggacttgaggattgaa
gggcgtataattggttttgatgagtatatgaacctggttctcgaagatgctgaggaagtc
aacgtcaaaaagaacaccaaaaagacattggggaggattttgctcaaaggagacaacata
actttgatgatgaatacggggaaatga
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