KEGG   Zingiber officinale (ginger): 122043280
Entry
122043280         CDS       T08725                                 
Name
(RefSeq) periodic tryptophan protein 2-like
  KO
K14558  periodic tryptophan protein 2
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    122043280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:zof03009]
    122043280
Ribosome biogenesis [BR:zof03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    122043280
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd ANAPC4_WD40 WDR55 Utp12 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_SCAP NBCH_WD40 Beta-prop_WDR19_1st Beta-prop_HPS5 WD40_like eIF2A WDR54 WD_LRWD1 Beta-prop_DCAF4 Beta-prop_DCAF12 Utp21
Other DBs
NCBI-GeneID: 122043280
NCBI-ProteinID: XP_042459761
LinkDB
Position
2A:171998397..172003444
AA seq 894 aa
MNFRFHNLLGAPYRGGNAVVTADGVLLSPVGNRVSATDLLKSQSQTLSFEASANISRIAV
TPDGSFLLAVDSNSRALFVNLSRHVVLHRIKFKRPVTALRFSPDGEHIAVGLGKLIQIWR
SPGFRKEFFPFELERTYSDFVGTVTTLEWSPDSKYLLAGSKDLTVRLFYLKERRTNKPYL
FLGHRDNIVGAFFSTDKISGTVVRVYTISRDGGLFTWKLVENYDFDGHKEPDSDPPSPGT
PEQKTSERDQAAESMDIDDNKRKRKKKGGDDGAEKPKILLHRARWELVKKDYFMQGSAKV
AACDYHRDLDMVVVGHSNGAFGLYQMPDFVCIHLLSISREKITTAVFNKLGNWLTFGCAK
LGQLLVWEWRSESYILKQQGHYFDVNCIAYSPDSQMIATGADDNKVKVWTVSSGFCFITF
AEHSNAVTALHFMANNHTLISASLDGTVRAWDLFRYRNFRTFTTPSPRQFVSLSSDPSGE
VICAGTLDSFEIFVWYMKTGRLLDVLGGHEGPVHGLMFSPTSASLASSSWDKTVRIWDVF
NGKGTVETFPHTHDVLTVVYRPDGKQLACSTLDGQIHFWDPFEGVLMHTIDGRRDIAGGR
LMTDRRSAANSTSGKYFTTICYSADGSYIFAGGNSKYICLYDVADKVLLRRFQLTRNLSL
DGVLDFLNSKKMTDAGPLDLIDDDDSDVEEGVDQQTRRSLGQDLPGAVLNRGRPVVRTKC
LRIAPTGRSWAAATTEGVLLYSVDDSFVFDPTDLDVDVTPEAVDEALKRDESQRALLLSL
RLNEDSLIKKCIFSVKPADIPSVSSSMPFKYLQRIVEAFAGLLESCPHLEFLLLWCQELC
KAHGNAIQQNSRSLLPALRSLQKSISMLHQDLTDTCSSNEYLLRYLCSTSTTPK
NT seq 2685 nt   +upstreamnt  +downstreamnt
atgaacttccgcttccataacctgttgggagctccctaccgcggcggcaacgccgtagtg
acggccgacggcgtcctcctctcccccgtcggcaatcgcgtgtccgccaccgacctcctc
aagtcccagtcacagaccctctcgttcgaggcctccgccaacatctcccgcatcgccgtc
acacccgacggctccttcctcctggccgtcgacagcaactcccgtgccctcttcgtcaac
ctcagccgccatgtcgttctccaccgcatcaagttcaagcggcccgttactgccctccgc
ttcagcccggacggcgaacatatcgccgttggcctcggtaagctcattcagatatggcgg
tcgcctggcttccggaaagagttcttccccttcgagctcgagcggacctattcagacttc
gtcggcacggttactacactggaatggagccccgattcgaagtacctcctcgctggatca
aaggatcttaccgtcagactcttctatttaaaggagagaagaacaaacaagccatatttg
tttctagggcatagggataacatagtgggtgcttttttctcaactgacaagataagcggt
actgttgttagggtttataccatttcgagagacggcgggttatttacatggaaattggta
gaaaattatgattttgacggtcacaaggagcctgactcagaccctccttcacctggtaca
cctgaacagaagacttctgaaagagatcaagctgcagagtccatggatattgatgataat
aagcgaaagaggaaaaaaaagggtggtgatgatggcgctgaaaagcctaagatccttttg
catagagctagatgggagcttgttaagaaggattactttatgcagggctctgcaaaggta
gccgcttgtgattaccaccgagatttggatatggtggtagtcggacattccaatggtgct
tttggtctgtatcagatgccggactttgtttgcatccacttgctttccatttcgagggag
aagatcacaactgcagtgttcaacaagcttggcaattggctgacatttggttgcgcaaag
cttgggcaattacttgtgtgggagtggcgatcagagagttacatattgaagcaacaagga
cattattttgacgttaactgcattgcatattcacccgactcacagatgatagctacagga
gctgacgataacaaagtcaaggtttggacagtttcatcagggttttgtttcattactttt
gcagagcactctaatgctgtcacagcactccattttatggccaataatcatactcttata
agtgcatcactagatgggacagttcgcgcttgggatttattccgttaccggaattttagg
actttcactaccccttctcctagacaatttgtctctttatcatcagatccaagtggtgaa
gtgatttgtgctggaactcttgattcatttgagatatttgtttggtacatgaagactggg
cgcttattggatgttttaggtggccatgagggaccagtgcatggtctaatgttttccccg
acaagtgcatctctagcttcgtcttcttgggataaaactgttcgcatatgggatgttttt
aatgggaaaggcactgttgaaacttttcctcatacacacgatgttcttactgtagtatat
cgtccagatggaaagcaactagcctgcagcacattagatggtcagattcacttttgggat
ccttttgagggagtgttaatgcacactattgatggtcgcagggacattgccggcggacgt
ctcatgacagataggcgatcagctgctaattcaacttcaggaaaatattttacaactata
tgctattctgcagatggaagctacatttttgctggtggaaatagtaaatacatatgcttg
tatgatgttgcagataaggtacttcttcgtagattccaactcactcgaaatctctccttg
gatggagtccttgattttttgaactctaagaagatgacagatgctggcccattggattta
attgatgatgacgactctgatgttgaagaaggggttgatcaacaaactcgcagaagtctg
ggacaggatttacctggagctgtgttgaatcgcggacgacctgttgtccgtacgaaatgt
ttgagaatcgcaccaactggaagatcatgggctgcagctaccacggagggagtcctccta
tactctgttgatgactccttcgtgtttgatccaactgatcttgacgtggatgtgactccc
gaggctgttgatgaagctctgaagagggatgagtcgcaaagggcattgttgctcagcctt
cgattgaatgaagattcgctgatcaaaaaatgcattttttcagtgaagcctgcggatatt
ccttctgtttcctcatcgatgccattcaagtacctgcagcgtattgttgaagcatttgct
ggtcttttggaaagttgtcctcatcttgaatttcttcttctctggtgccaggagctctgc
aaggctcatggtaatgccattcagcagaattctcgaagcctgctgccagcattgaggtcc
ttgcagaaatctatttccatgctgcatcaggatctaacagatacatgttcatccaacgaa
tatttactcagatacttgtgctcaacaagcaccacgccaaaatag

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