Zingiber officinale (ginger): 122043343
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Entry
122043343 CDS
T08725
Name
(RefSeq) coronatine-insensitive protein homolog 1b-like
KO
K13463
coronatine-insensitive protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122043343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122043343
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122043343
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
LRR_2
LRR_At1g61320_AtMIF1
F-box
Motif
Other DBs
NCBI-GeneID:
122043343
NCBI-ProteinID:
XP_042459849
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Position
2A:173353118..173359358
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AA seq
587 aa
AA seq
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MSARTLNRVMSFGISDLALEFVLGYVDDPRDREAVSLVCKKWYQIDALSRKHVTIAICYS
TSPGRLRRRFPNLESLQLKGKPRAAMFNLIPEDWGGYVGPWIREIAEAFNCLKSLHLRRM
IVKDEDIRVLVKARGHMLESLKLDKCSGLSTDGLLLVARSCRCLRILSLEESSISGNDAK
WIHELAVNNSVLETLNFYMTELRVAPEDLELLAKNCRSLVSLKISECDISYLISFFLIAT
KLEEFGGGSFNDQVGDLDKYMKIQFPPKLCCVGLIFMGKNEMEILFPFAAALKKLDLQYT
FLSTEDHCQLIQRCPNLEVLEVRDVIGDRGLEVVAQTCKKLRRLRIERGDDDQGLEDEQG
CVSQAGLSSLAQGCLELEYLAVYVSDITNAALECLGTYSKNLCDFRLVLLDREQRITDLP
LDNGVRALLKGCAKIRRFALYLRPGGLSDVGLGYIGQYSNNVRWILMGNIGESDRGLLRF
SQGCPRLQKLELRSCCFTERALAMAALRLPSLRYLWVQGYVASPFGNDLLLMARAFWNIE
FIPPKHDVNETEDRRGNIESQAQILAYYSLAGKRVDCPDSVIPLHPA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcccggacgttgaaccgggttatgagctttgggatatcggacttggcgttggag
ttcgtgctggggtatgtggacgaccctcgggatcgggaggccgtctcgctggtctgtaag
aagtggtaccagatcgacgccctctcgcggaagcacgtcaccatcgccatatgctactcc
actagccctggccgactgcggaggaggttccccaacttggagtcgctgcagctcaagggc
aaacccagggccgccatgttcaatctcatacccgaggattggggcggctatgtcggcccc
tggatcagggagatcgccgaggctttcaattgcctgaaatcgctccacctcaggcgtatg
atagtcaaggatgaggacatacgcgtcctcgtcaaggccagagggcatatgctcgaatcg
ctcaagctcgataagtgctctggattgtccacggatggcctccttctagttgcgcgttcc
tgcagatgcctcagaatattgtctctggaagaaagctcaatttctggaaatgatgccaaa
tggatccatgagctagctgtcaataacagtgtactcgagactttgaatttctatatgact
gagctcagagttgcacctgaggacctcgagttacttgctaagaattgcaggtccttagtt
tctttgaagatcagcgagtgtgacatctcctatttaattagttttttcctaattgcaaca
aaattggaggagtttggcggcgggtcatttaatgatcaagtcggagatcttgataagtat
atgaagattcagtttcctcccaaattatgctgtgtaggtctcatctttatggggaagaat
gagatggaaatattatttccatttgctgcggcacttaagaagcttgatttacagtataca
tttctcagcactgaggatcattgtcagttaatccagcgttgcccaaacttagaagttctt
gaggtgagggatgtgattggagatagaggattagaggttgttgcacagacatgtaagaag
ctcagaaggctaaggatagaacgaggggatgatgaccaaggtctggaggatgaacaggga
tgtgtttcccaagccggtctatcgtctctagcacagggatgccttgaattggaatacctg
gcagtatatgtatctgatataacaaatgcagctctagagtgtctgggcacttacagcaaa
aacctctgtgattttcgtcttgttttactggatagagaacagaggataacagatttgcca
cttgacaatggggttcgtgccctgctgaagggttgcgccaagatcagaagatttgccctt
tatctgagacctggtggactctccgatgttggtctcggttacattggacagtacagtaac
aacgtacggtggatactcatgggtaatattggggaatctgaccgagggttgcttcggttt
tcgcaagggtgtccacgcctacaaaagctagaactgaggagctgttgcttcactgagcgt
gctctagccatggctgctctgcgtcttccttctttgagatatctgtgggtgcagggttat
gtggcatccccttttggcaatgaccttctgctcatggcacgcgccttctggaacatagaa
ttcatacctccaaaacacgatgtcaatgaaactgaagacagacgaggtaacatagagagc
caggcacaaattctcgcttattattccctcgccggaaaacgagttgactgtcctgattct
gtgattccgttgcacccagcctga
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