Zingiber officinale (ginger): 122043477
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Entry
122043477 CDS
T08725
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122043477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122043477
03041 Spliceosome [BR:
zof03041
]
122043477
03036 Chromosome and associated proteins [BR:
zof03036
]
122043477
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122043477
Spliceosome [BR:
zof03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122043477
Complex B
122043477
Complex C
U2 SnRNP specific factors
122043477
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122043477
TFTC complex
122043477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
122043477
NCBI-ProteinID:
XP_042460031
LinkDB
All DBs
Position
2A:complement(177357699..177371072)
Genome browser
AA seq
1387 aa
AA seq
DB search
MAGMGEEGSPALASHSSSDSNSRRGVHYLAKCVLRGSAVLHAVQGHFRSPYSKDIVFGKE
TSLELASINEDGIIQSIFEQSVFGTIKDIAVLPLKDRHRGSPCQGQGKDILLVLSDSGKL
SLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFVAVSAYEDQFAVINLAIS
SERNVVYEKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQTKGYNPLMAIIMN
RKGSLMNDLLLFGCDPYSRIIQIISRYFESGPLALDISAIPHLPGFAILFRIGEMLLMDL
TDPQNVCCYHKISFDVPLLVEDKGYFDESCKILDVDDEGMFNVAACALLELKDSAADMYK
NDDPMSIDSSNGKISSTTKLVCSWTWEPATSLDSKLLLCLDTGELFKVEISSGAGGVQIN
LSDCLYKGMACKALLWTSCGLIAGLVEMGDGFVLKLEHDRLSYKSSIQNIAPILDISLAN
YYDENQDQMFACCGMNPGGSLRTVRSGISVEKLLRTAPIYPGVTGMWTLRMKQSDSYHSF
LVLSFVEETRILSVGLSFSDVSEAVGFQPDVCTLACGLFADRMLVQIHRCGVKLCLPSSS
AHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSISAFNFEIYE
IQHVRLQYEVSCISIPLRNANSKHLASEVTPNVKDHEASYIDKCDINTAFVIGTHKPSVE
LLSYGHQDVFRVIAVGAIEVSNALGSPISGCIPEDVRLVSVDHPYVLAGLRNGMLLRFEW
SAQTDPSRHSGFTRSCFNDFGSLSSSVDSLNSYYSAMEDTKAPTPIFLQLIAIRRIGITP
AVLVPMKESLDADIIVLSDRPWLLYTARHSLAYTSISFQPATHVSPVSSVDCPKGVLFVA
ENSLHLVEMIHCKRLNVQKFSIHGTPRKLLYHNESKTLLVLRTGLKGGPCSSDICRVDPL
SGTLLSKFQCEPGETAKCMQIVKVGNEQVLAVGTSQSSGRIIMPSGEAESTKGRLIVLSL
DFTYSSEGSPNHCSNLNLSSQSGSTFGEIIGHAGEELSLNSQCSSQGDICCDGIHLDETG
AGQLRLVSQALASGAVLSVCSYLDQFILASAGNTLNVFGFANENPQRLRKFATGRTRFAI
TCLKTFYNRIAVGDCRDGILFYSYHADVKKLELLYSDPAQRLVADCALMNRDTAIVSDRK
GNISVLSCPNTLEANEYPEKNLVLNCSFYMGETVMSIVKAPVPCKLPVDNFPNKSIGVEI
VQKSSYDSIVASTLLGSVFILIPITSEEYALLDAVQDRLAVHSLTSPVLGNNHREYRGRG
FPSGVPSILDGDMLMQFLELTSMQQESVLASSGGGSNSHALASESHRHPLYSNQVVHLLE
QIHYTLN
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcatgggagaggagggatcgcctgcgctggccagtcattccagttcggactcc
aactcccgccgcggcgtccactacctcgccaagtgtgtcttacgcggaagcgctgttcta
cacgctgtgcagggccacttccgttcgccttactccaaggacatcgtatttggcaaggaa
acatcactagaattggcatcaattaacgaagatggcatcatacaatcaatatttgaacaa
agtgtttttggtacaattaaagacattgcagtcctacccttgaaggacagacaccgaggg
tctccatgtcaaggacaaggaaaagacatcttgcttgttctttctgattctggaaaactt
tcattgcttactttctgctcggagatgcataggttctttgcaatgacacatattgaatta
tccaaacctggaaatacaaggcatcaactaggtagaatgttagctgtcgatcctggagga
tgttttgtcgctgttagtgcatatgaagatcaatttgcagtaataaatctagccatatct
tctgaaaggaatgttgtttatgagaaaatttattatcctccggaaagcaaaattgatgca
agcaatggacgggacactttgggctccattgtccggggtacaatatggagtatgtgcttc
atttcacatggtacttatcagacaaaaggatataatccccttatggcgattattatgaac
aggaaaggttcattaatgaatgacttgctactgtttggatgtgatccgtattcacggatt
attcaaatcatttctcggtattttgaaagtggccctttagcacttgatatatctgcgatc
cctcatctccctggctttgctattcttttcagaataggtgagatgcttttgatggatctt
acagaccctcaaaatgtctgttgctatcacaagataagctttgatgtgcctcttttggtt
gaagataaaggttattttgatgagtcttgtaagatattagatgttgatgatgaaggtatg
tttaatgttgctgcctgtgctttgctggagttaaaagattcagcagctgatatgtataaa
aacgatgatcctatgagcattgatagcagcaatggaaaaatttcttcaactactaagctt
gtatgctcatggacttgggaacctgctacctccttggattctaagttgttattgtgttta
gacaccggggaactatttaaggttgaaatttcttctggtgctggtggagttcaaattaat
ttgtcagactgtctctacaagggcatggcttgtaaagcactcctatggacaagttgtgga
ttaattgcaggtctagtggagatgggagatgggtttgttcttaagctagaacatgataga
ttatcctacaaaagttctatccaaaatatcgctccaattttggatatatcacttgctaat
tattacgatgagaaccaagatcaaatgtttgcttgttgtggaatgaatcctggaggttca
ttaagaaccgttcgaagtggtatatctgtagaaaaacttttgaggactgcacctatttat
ccaggagtaactggtatgtggaccttgaggatgaaacaaagtgactcttatcactctttc
cttgttttgtcctttgttgaagaaactagaatattatcagttggtttaagcttcagtgat
gtaagtgaagcagttggctttcagcctgatgtatgtactttggcctgtggtttgtttgct
gatagaatgcttgtacaaattcataggtgtggtgtaaaactctgtttaccttcttcatct
gctcatcctgagggcatacctctttctcaaccatttttttcttgttggtctcccaataat
atgacaattagtgttggcgctgtaggtcaaaatttggtaatcgtagctacctctaatcct
tgctttctttacattcttggtgtccgatcaatatcagcatttaattttgaaatatatgag
attcagcatgtcagactgcagtatgaagtttcttgcatttctattccattgagaaatgcc
aattctaaacatttggcctcagaagttacaccaaatgtcaaggatcatgaagctagttac
attgataaatgtgatattaatactgcttttgtcattggtacacataagccatcagttgaa
cttctatcatatggccatcaagatgtgttcagagtgattgctgtaggagctatagaagtg
agcaatgcacttggtagtcctattagtggatgtattccagaagatgttaggcttgtatca
gtggatcatccttatgttctcgctgggctgagaaatggaatgcttcttcgttttgagtgg
tctgctcagacagatccaagcaggcatagtggttttactaggtcttgttttaatgacttt
ggaagtctttcatcaagtgtggatagtttaaattcttattatagtgcaatggaagatact
aaagctcccacgcctatttttttgcaattgattgctattcgacgcataggaattactcct
gctgttttggtaccaatgaaagaatcacttgatgcagacataattgtactcagtgatagg
ccttggttactatatacagcaaggcacagccttgcatatacatctatctcatttcagcct
gctactcatgtgtctcctgtcagttctgttgactgtcctaagggggttctgtttgttgca
gaaaacagcttacatctggttgaaatgatacattgcaagagacttaatgtgcaaaagttt
tccattcatggcactccaaggaaacttttatatcataatgaaagtaagactttactggtg
ctgagaactggactaaagggtggaccatgctcatcagacatatgtcgtgtagatcccctt
agtggaacattgctttcaaaatttcagtgtgaacctggggaaacagcaaaatgcatgcaa
atagtgaaggtaggaaatgaacaagtcttggctgtgggaaccagtcaatcttctggcagg
attattatgcctagtggtgaagctgaaagtacaaagggccgactgattgtgttgagcttg
gatttcacatatagttccgaggggagcccaaaccactgctctaatttgaatctatcttcc
caaagtggctctacatttggggagataattggccatgctggtgaagaattgtcacttaat
agtcagtgcagcagccaaggtgatatttgttgtgatggtattcatcttgatgaaacaggg
gcagggcaattgcgattagtttcccaggccttagcatctggtgctgtactgtcagtctgc
tcttatctagaccagtttatcttggcttctgctggtaatactcttaatgtttttggcttt
gcaaatgagaaccctcagcggctgagaaagtttgctacgggcaggacacgttttgccatt
acttgtttgaagacattttataatagaatagcagttggtgattgccgtgatggtatcctt
ttttattcgtatcatgcggatgttaaaaaattagaactcttgtattctgatcctgctcag
agattggttgctgattgtgctctgatgaatcgtgatactgccatcgtatcagatcgtaaa
gggaacatttctgttttgtcatgtcccaatactttagaagccaatgaataccctgagaag
aacctggtgctgaattgttcattttatatgggtgaaactgttatgagcattgtaaaggct
ccagttccatgtaaacttccagtagataattttcccaataaatctattggtgtggagata
gttcagaaatcttcctatgatagtattgtcgcaagcacgttgctaggaagtgtcttcatc
ctcattcctattacaagtgaagaatatgcattgttagatgccgtccaagatcgacttgca
gttcattctctgacttctcctgttctaggaaacaaccacagggaataccgtgggcgtgga
tttccgtcgggagttcctagcatactcgacggagacatgctcatgcagttcttggagcta
acaagcatgcagcaagaatctgtactcgcttcatcaggaggtggatcaaactcccatgca
ttggcttcagagtcgcatcgccatcctctctactccaaccaggttgtacacctactcgaa
caaattcattacacactcaactga
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integrated database retrieval system
