Zingiber officinale (ginger): 122045034
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Entry
122045034 CDS
T08725
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122045034
03420 Nucleotide excision repair
122045034
03430 Mismatch repair
122045034
03440 Homologous recombination
122045034
03460 Fanconi anemia pathway
122045034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122045034
03032 DNA replication proteins [BR:
zof03032
]
122045034
03400 DNA repair and recombination proteins [BR:
zof03400
]
122045034
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122045034
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122045034
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122045034
MMR (mismatch excision repair)
122045034
DSBR (double strand breaks repair)
HR (homologous recombination)
122045034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
Hormone_4
Motif
Other DBs
NCBI-GeneID:
122045034
NCBI-ProteinID:
XP_042461013
LinkDB
All DBs
Position
2B:complement(2007727..2011418)
Genome browser
AA seq
846 aa
AA seq
DB search
MAAVDLSRGAIAAISEGRGEEGAKPVVQVWDLRLVNTQQTTTERYRMLLSDGTHMQQAML
ATQMNGIVKSGSLQKHSIVQLNEFICNVIQNRTIIIVINLDVLVSSNSAIGEPKMFDNGT
SLQNRASMPAQSSSVDQPSIAAANRQTYGLHSATPNIGQNVSGGASLHQQAEPRTNNPSF
GGNYGPVSSRNMNIENIEHPKVDHGTGRLSESHPYSGNQNLRSNSTSVGVFRPPASSYVR
PAQSVDQQPPPMYSNRGPLARNEAPARIIPIAALNPYQGRWTIKARVTTKGDLRRYNNPR
GEGKVFSFDLLDSDGGEIRVTCFNTIADQFFDQIEVGKVYLISKGSLKPAQKSFNHLNNE
YEIFLESQSVIQPCLDEDPTIPKQQFNFRAINEIEGLENNSMVDIIGVVTSINPSVSIMR
KNGTETNKQTLQLKDMSGRSVDVTLWGNFCNMDGKQLQSMCDSGVNPVLAIKAGRVSDFG
GKSVGTIMTSQLFINPDFTEAHRLREWCNGEGKTMAAPSISRDATTMGRNDVRKSVAQIK
DEGLGRSEKPDWITVKATVTFVKVDNFCYTACPLMVGDRSCNKKVNNNGNGTWHCDRCDQ
DFPECDYRYILQFQIQDHTGMTWVTAFQECGEEILGVAAKELYLLKYEEQDDMKFAEIIR
TGIFHQYLFKLKVKEETFSDEQRVKSTVVKVERINPSAESRFVLGLIEKFSNEDHNVSAG
AHGTFASTSEISTSMYGSVESNCNIYAATNNYSPFHNTDGYRMGAPTNQSAQYSNNYGGV
IKQNFNQNEVQLHCNNCGGNGHSFQNCPRGINWQAQQSDPGAGTFAAAYGGSGTSGRFTR
QNVGGF
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggtggatctgagtcggggagcgatcgcggcgatatcggaggggcggggggag
gagggcgctaagccggtggtgcaggtgtgggatttgaggttggtgaacactcagcagacc
accacggagaggtaccggatgttgctgtccgacgggactcatatgcagcaggccatgctc
gcgacgcagatgaatgggatcgtcaaatcggggtctcttcagaagcactccatcgtccag
ctcaacgagttcatctgcaacgtcatccagaaccgcacaattattattgtcatcaacctg
gatgtccttgtcagtagtaacagcgctataggagaaccaaaaatgtttgataatggtact
tctttacaaaaccgagcttcaatgcctgctcagtcatctagtgtagatcaaccatccata
gctgcagctaatcgtcaaacatatggtctgcactctgctactcccaacattggacagaat
gtttctggaggagcttctctgcatcagcaggctgagcccaggacaaacaacccatcattt
ggtggtaattatggtcctgtgtctagtaggaacatgaacattgagaatattgaacatcca
aaagttgaccatggtacggggcggttgtccgagtcacatccatatagtggtaaccagaac
ctgaggtcaaattcaacatcagttggtgtgttccgtccacctgccagttcttatgtgcgt
cctgcccagtctgttgaccagcagccccctccaatgtactcaaatagggggcctttagct
agaaatgaagctcctgctcgaattatcccaattgctgctttgaatccttaccagggcaga
tggacgattaaggcaagagtaacaactaaaggggaccttaggcgctataacaatcctaga
ggagaaggaaaagtcttttcttttgatcttctggattctgatggtggagagatacgagtc
acttgctttaacacgatagctgatcagttctttgatcagattgaagttggtaaagtttac
ctgatttctaaaggtagcttgaagcctgcccagaagagctttaatcatctgaataatgaa
tatgaaatctttttagaatctcagtcagtcattcagccttgtttagatgaagaccccacc
attccgaagcaacagttcaactttcgtgcaataaatgaaattgaaggcctggaaaacaat
tcgatggtcgatataattggcgttgtcacttcaataaatccttcagtttcaatcatgagg
aaaaatggcactgaaactaataaacaaactcttcagttgaaggacatgtcaggccgtagc
gtcgatgtgactttgtggggaaatttttgtaacatggatggtaaacagctgcaaagtatg
tgtgactctggtgtgaatcctgtattggcgattaaagctggtcgagttagtgattttggt
ggaaaatcagtaggtactatcatgaccagccaactgtttataaatcctgattttactgag
gcccacagattgagagaatggtgtaatggtgaagggaagactatggctgctccttcaata
tccagagacgccaccaccatgggtagaaatgatgttcggaagtctgttgcacagatcaag
gacgaggggttgggaaggtcagagaaacctgactggataaccgtcaaggcaactgttacg
ttcgtaaaagttgataatttctgctatacagcttgtccactaatggtgggggacagatca
tgcaataaaaaggttaataacaatggtaatggcacatggcattgtgatcgttgcgaccag
gattttcccgagtgtgactacagatacattctccagtttcagatccaggatcatacaggc
atgacctgggttactgcattccaagaatgcggggaggagattttgggcgtcgctgccaag
gagctttacttgttgaaatacgaggaacaagatgatatgaagtttgcagaaatcatccgg
acaggcatcttccatcaatacttattcaagttgaaagttaaagaggagacattcagtgat
gagcaacgtgtgaaatcaactgttgtcaaagtcgaaaggataaatccatctgctgagagc
aggtttgtcttgggtctgattgagaagttctcaaatgaagatcacaatgtatctgcgggg
gcgcacgggacttttgcttcaacttctgagatttctacctccatgtatggctctgttgaa
tcgaactgtaatatctatgctgctaccaataactatagcccctttcacaacactgatgga
tatagaatgggagcaccgacaaaccaatcagcccagtattcaaataactatggtggagtc
atcaaacaaaattttaaccaaaacgaagttcaactacattgtaacaattgcggcggcaac
ggtcacagcttccaaaattgtccaagaggcataaattggcaggcacaacaatctgatcca
ggagctggaacctttgcagcagcatatggtggttctggcacatcaggaagattcaccaga
caaaatgtaggtgggttctga
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integrated database retrieval system
