Zingiber officinale (ginger): 122045157
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Entry
122045157 CDS
T08725
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122045157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122045157
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122045157
mRNA degradation factors
5'-3' decay
Decapping complex
122045157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
122045157
NCBI-ProteinID:
XP_042461191
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Position
2B:complement(5037722..5042888)
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AA seq
816 aa
AA seq
DB search
MVRRFEGEGSGPRNPKRPCDDPQHTGYAVADNPLFDASQYVFFGKEDAELGGLEDDEGDN
CSFIRIGDEYHFPTTTDREGVVPSGAQNVNEVEGLAYLSDNDDLASTFAKLNRVVSGPRT
PGVIGDRGSFSRESSSTADWTQDEDYLNWIDQRILDAENVQEGKRWRSQPRPPSSQLSLS
KPLYRASSDPQQPHYQQTFQPQQRQQYAQESTPPASSLFTSYDPHGEPSQSFSNLTKHLS
IPSANTGVHFLGPTLASYTDPQQLLGRSVSGLHYAHDIARGVAHNPTTSSWARDYLLNHT
GLFSGDDLSPNMLRHQLSLPSNLVASQILLQHQQHRLSQLQPYHLCFSHSQANLFHSHGS
PSQMRNKLDLDIGVPGSRDNRHRASLKGKRHFQFSHESSDTGNMKVDNRRPQIRSKYMTS
EEIESILKMQNAASRNNDPYTTDYYHQACLAKKSTGRPKCNFCPRSLKDLPSRSRGSSES
HAHLQVDAVREVPLSSVHRPHPLLEVDMPSSKSSMKSLEQEPLVAARITIEDGISLLLDV
DDIDRLLQFNPPQDGGLQLRRRRQISLDGLAATLNLVDPLGPSGAGYSGLNPKDDIVCLH
IISLAKGRKLISRYLQLLDPRSNLTRVVCMVVFRHLRFIFGGQSSDSSSSETIENLAQTV
SLCVHNMDLSALSACLAAAVCSTEQPPLRPIGSASGDGATIVVKSVLDRATHLLSDRQAA
GSYSISKWNFWRESFDAFFRLLTEYCRRKYDNIQQMLRDEASKDAIPVSEATIAMRREMP
VDLLRSSLPHTSEHQQKDLIEFAEKLMPVMAFRDLQ
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atggtaaggagatttgagggggaaggttcgggtcctcggaaccctaaacgcccctgtgat
gatcctcaacataccggctatgctgtcgcagataaccccctgttcgatgcctcacagtat
gtattctttggaaaggaagatgccgagttgggaggtttggaagatgatgaaggtgacaat
tgtagttttattaggattggtgatgaataccatttccctactactacagacagagaggga
gttgttccttctggagcacaaaatgtaaatgaggttgaagggttagcttatttatctgat
aacgatgaccttgcgagcacttttgcaaagttaaacagagtggtcagtggtccaaggact
cctggagttattggtgatagaggatctttttctagagaaagttcttctactgcagactgg
acacaggatgaagactatttaaactggattgatcagcgaatattagatgctgaaaatgtt
caggagggcaagagatggcggtcacaaccacgaccgccatcgtctcagctttctttatca
aaaccattgtacagagcttcatcagatcctcagcagccacattatcaacaaacctttcag
ccgcagcagaggcagcaatacgctcaggaatcaacccctccagccagctcacttttcact
tcctatgatcctcatggcgaaccatctcagtcgttctcaaatcttacaaagcatttaagc
attccctctgctaatactggagtacatttccttggcccgactcttgcctcctacactgat
cctcagcaactcttgggaagatcggttagtggattgcactatgctcatgacattgcccgc
ggagtagctcataatcctactacgagcagttgggcaagggactatttgctgaatcatact
ggtctattttcaggtgacgatctgtctcctaacatgcttcggcatcaattgtctctgccg
agcaatttggtagcttcacagatattattgcagcatcaacaacatagattgtcacaactc
cagccataccatctctgtttctctcactcgcaggctaatttgtttcactctcatggttcc
ccttcgcaaatgaggaacaagcttgatctagatatcggagtgcctggttcaagagacaat
agacacagagcatcactaaaaggaaagcgccattttcaattttcacatgagtcttctgat
actggaaacatgaaggtcgataacaggcggccacagattagatcaaagtacatgacatct
gaagaaatagaaagcattttgaagatgcaaaatgcagcaagccgcaacaacgatccatac
acaactgattattatcaccaggcttgtcttgcaaagaaatcaactggaaggccgaaatgc
aatttctgtccaagaagcctaaaagatttgccttctcgatcgcgtggcagtagtgaatca
catgctcatcttcaggttgatgcagtcagggaggttccactctcttcagttcaccgacct
catcctcttcttgaagttgacatgccttcctcgaagtcttccatgaaatccctggagcag
gagccacttgtagctgctagaatcaccattgaagatggtatctcccttctccttgatgta
gatgatatcgatcggcttttacagttcaatcctccacaagatggcggtctacaactgcgg
cggaggagacagatttctctggatggacttgcagcaacacttaatcttgttgatccactg
ggacctagtggagctggttattctggtctcaatccaaaggatgacattgtctgtcttcac
ataatctctcttgccaagggccggaaactcatatcacgttatcttcaacttctcgacccc
agaagtaacctcacgcgagtagtctgcatggttgttttccggcacttgagattcatattc
ggtggacagtcatccgactccagttcatcagagacaatagaaaatctagcacagactgtt
tccttatgtgtgcacaatatggacttaagtgcactcagcgcttgccttgctgccgcggtc
tgttcaactgaacaaccgcctcttcgccccattggaagcgcatccggtgacggagccacc
atcgtcgtgaaatctgttcttgaccgggcaactcatcttctgtcggaccgtcaagctgca
ggctcttacagcatatctaagtggaatttttggcgggaatcattcgacgctttcttcagg
cttctgactgagtactgccggcgtaaatacgacaacattcagcaaatgttacgcgacgag
gcatcaaaagatgctatccctgtctctgaggcaactatagcaatgaggagggagatgcct
gtcgatctgttacggtcgagccttcctcatacgagtgagcaccagcagaaggatttgatc
gagtttgctgagaaattgatgcctgttatggcttttagagatcttcaatga
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