Zingiber officinale (ginger): 122045354
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Entry
122045354 CDS
T08725
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122045354
09122 Translation
03013 Nucleocytoplasmic transport
122045354
03015 mRNA surveillance pathway
122045354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122045354
03041 Spliceosome [BR:
zof03041
]
122045354
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122045354
TREX complex
122045354
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122045354
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122045354
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
YHR127W_C
RRM_3
RRM_10
Motif
Other DBs
NCBI-GeneID:
122045354
NCBI-ProteinID:
XP_042461477
LinkDB
All DBs
Position
2B:13995428..13998475
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AA seq
239 aa
AA seq
DB search
MSGALDMSLDDIIKNNKKTNGGGRGRGRGSGPGPSRRFPNRATNRSAPYSVGKAPESAWQ
HDMYSAAPPGGFPVPTAKASSIETGTKLYISNLEYGVSNEDIKELFSEVGDIKRYSINYD
RSGRSKGTAEVVFAKRTDALAAVKRYNNVLLDGKPMNIEIIGTNIPTPAVVPQPSNGVMG
NPIGGLRSGTIRGSAGWPRAGGRGRGRGRGRGKGRGEPVSADALDADLDKYHSEAMQTN
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgcccttgacatgtccctcgacgacatcatcaaaaacaacaagaagactaac
ggtggaggccgtggacggggccgtggctccggccctggtccttcccgccgcttccccaac
cgagcaacaaaccgatccgccccctactctgttgggaaggctcctgaatcggcgtggcag
cacgacatgtactcggcggctccgccaggcgggtttcctgttccaacggcgaaggcgtcc
tccatagagaccggaacaaagctatatatttccaatctggaatatggggtctcgaacgag
gacatcaaggaacttttttcagaggttggggatatcaagcgctattctattaattatgat
agaagtggaaggtctaagggaacggctgaagtagtttttgcaaagcggactgatgctttg
gcagctgtaaaaaggtacaacaatgtgctgcttgatggaaaaccaatgaatatagaaatt
attgggacaaatattccaacaccagctgttgttcctcagccctccaatggtgtcatggga
aatcctattggtggtttaagaagtggtacaattaggggttctgcaggatggccacgagct
ggtggccgtggaagaggtcggggacgtggacgaggtaaaggtcgtggtgaaccagtttct
gctgatgcacttgatgctgatttggataagtatcactcagaagcgatgcaaaccaattga
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integrated database retrieval system