KEGG   Zingiber officinale (ginger): 122045354
Entry
122045354         CDS       T08725                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03013  Nucleocytoplasmic transport
zof03015  mRNA surveillance pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122045354
  09122 Translation
   03013 Nucleocytoplasmic transport
    122045354
   03015 mRNA surveillance pathway
    122045354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:zof03019]
    122045354
   03041 Spliceosome [BR:zof03041]
    122045354
Messenger RNA biogenesis [BR:zof03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     122045354
    TREX complex
     122045354
Spliceosome [BR:zof03041]
 Complex C
  Other components
   EJC/TREX
    122045354
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    122045354
SSDB
Motif
Pfam: RRM_1 FoP_duplication YHR127W_C RRM_3 RRM_10
Other DBs
NCBI-GeneID: 122045354
NCBI-ProteinID: XP_042461477
LinkDB
Position
2B:13995428..13998475
AA seq 239 aa
MSGALDMSLDDIIKNNKKTNGGGRGRGRGSGPGPSRRFPNRATNRSAPYSVGKAPESAWQ
HDMYSAAPPGGFPVPTAKASSIETGTKLYISNLEYGVSNEDIKELFSEVGDIKRYSINYD
RSGRSKGTAEVVFAKRTDALAAVKRYNNVLLDGKPMNIEIIGTNIPTPAVVPQPSNGVMG
NPIGGLRSGTIRGSAGWPRAGGRGRGRGRGRGKGRGEPVSADALDADLDKYHSEAMQTN
NT seq 720 nt   +upstreamnt  +downstreamnt
atgtcgggcgcccttgacatgtccctcgacgacatcatcaaaaacaacaagaagactaac
ggtggaggccgtggacggggccgtggctccggccctggtccttcccgccgcttccccaac
cgagcaacaaaccgatccgccccctactctgttgggaaggctcctgaatcggcgtggcag
cacgacatgtactcggcggctccgccaggcgggtttcctgttccaacggcgaaggcgtcc
tccatagagaccggaacaaagctatatatttccaatctggaatatggggtctcgaacgag
gacatcaaggaacttttttcagaggttggggatatcaagcgctattctattaattatgat
agaagtggaaggtctaagggaacggctgaagtagtttttgcaaagcggactgatgctttg
gcagctgtaaaaaggtacaacaatgtgctgcttgatggaaaaccaatgaatatagaaatt
attgggacaaatattccaacaccagctgttgttcctcagccctccaatggtgtcatggga
aatcctattggtggtttaagaagtggtacaattaggggttctgcaggatggccacgagct
ggtggccgtggaagaggtcggggacgtggacgaggtaaaggtcgtggtgaaccagtttct
gctgatgcacttgatgctgatttggataagtatcactcagaagcgatgcaaaccaattga

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